diff --git a/.opencode/skills/verify-web/SKILL.md b/.opencode/skills/verify-web/SKILL.md new file mode 100644 index 0000000..0da714f --- /dev/null +++ b/.opencode/skills/verify-web/SKILL.md @@ -0,0 +1,126 @@ +--- +name: verify-web +description: Drive and prove the protocol-visualizer-web landing page (Vite + React static marketing site) in real headless Chromium. Use when verifying any user-facing behavior of the site — hero, feature cards, AI workflow section, theme toggle, install guide — or after changing components under src/. +--- + +# Verify protocol-visualizer-web + +This skill drives the real landing page the way a user sees it: a local `vite` +dev server plus headless Chromium over CDP. No mocks, no test-only endpoints — +the page is rendered with JavaScript and asserted through DOM state, +accessibility tree, and screenshots. + +Facts established from the repo (do not re-derive unless the repo changed): + +- **Surface:** single static marketing page (`src/App.tsx` renders `Header`, + `Hero`, `Features`, `AiWorkflow`, `Screenshot`, `TryCta`, `Install`, + `Disclaimer`, `Footer`). No backend, no auth, no database, no router. +- **Run:** `bun x vite --host 127.0.0.1 --port --strictPort` from the repo + root. Ready means HTTP 200 plus `
` in the shell. + Default verify port is `5173` (`VERIFY_PORT` overrides). +- **Drive:** `scripts/drive.mjs` launches headless Chromium (Playwright-cached + build or system Chrome, resolved automatically) with a disposable profile, + navigates over CDP, evaluates DOM assertions, and captures evidence. + Zero npm dependencies — bun built-ins only. +- **Isolate:** stateless static page. Parallel runs isolate by app port + (`VERIFY_PORT`) and CDP port (`VERIFY_CDP_PORT`, default `19222`). + Each drive uses a fresh Chromium profile, so `localStorage` never leaks + between runs. Never drive a URL you did not start (e.g. someone's + `npm run dev`); refuse and start your own. +- **Shell lifetime:** background processes do not survive across separate tool + calls in this environment. Prefer the one-shot `verify.mjs` below, which + owns the server as its own child for the whole run. + +## Launch + +Recommended one-shot (launch + doctor + drive + cleanup in one command). +Run from the repo root: + +```powershell +bun .opencode/skills/verify-web/scripts/verify.mjs --feature --port 5173 +``` + +`` is one of `hero`, `features-grid`, `ai-workflow`, `theme-toggle`, +`install-guide` (see `features/`). The run directory is +`.opencode/skills/verify-web/artifacts//` (`VERIFY_RUN_ID` overrides). + +Manual launch (only for interactive debugging; must stay in the same shell +session for subsequent steps): + +```powershell +$p = Start-Process bun -ArgumentList @('x','vite','--host','127.0.0.1','--port','5173','--strictPort') -PassThru +# ... run doctor/drive against http://127.0.0.1:5173/ ... +Stop-Process -Id $p.Id -Force +``` + +Ready signal: `Vite ready` in the log AND `doctor.mjs` exit 0. + +## Doctor + +Read-only check. Run first whenever anything looks off: + +```powershell +bun .opencode/skills/verify-web/scripts/doctor.mjs --url http://127.0.0.1:5173/ +``` + +Exit 0 with `{"ok": true, ...}` means worth driving. It asserts HTTP 200, +`
`, and a dev (`/src/main.tsx`) or built (`/assets/`) client. +It never starts, stops, or mutates anything. + +## Drive + +```powershell +bun .opencode/skills/verify-web/scripts/drive.mjs --url http://127.0.0.1:5173/ --feature --out +``` + +Optional: `--chrome ` (or `CHROME_PATH` env) pins the browser binary; +`--cdp-port ` (or `VERIFY_CDP_PORT`) isolates parallel runs. + +Recipe per run: launch Chromium with a fresh profile → open CDP → +`Page.navigate` → wait for `#root h1` → evaluate the feature's checks from +`features/.md` → `Page.captureScreenshot` → dump `outerHTML` → +`Accessibility.getFullAXTree` → write `result.json` (exit 0 only if every +check passes). The theme-toggle recipe clicks twice so the page is left in +its original theme. + +Conventions: prefer the ARIA/semantic handles named in the feature files +(`aria-label`, roles, heading text) over CSS position. Treat every command +as literal. + +## Evidence + +Per feature, `//` (or `/` for a single feature) contains: + +- `screenshot.png` — rendered page (1280×900) with app identity visible +- `dom.html` — rendered DOM after React hydration (proves content, not shell) +- `axtree.json` — full accessibility tree (proves ARIA handles) +- `result.json` — each check id, pass/fail, observed value + +Proof standards: exercise the real user path (navigate, read, click — never +vitest/jsdom or internal setters); capture the action and the resulting state +(a green check alone is not proof — the screenshot and DOM must show the +state); verify side effects (theme-toggle asserts `documentElement` theme AND +`localStorage`); mocks nowhere — there is no network boundary in this app +other than the two external demo URLs, which are asserted as attributes, not +fetched. Report unreachable paths with the command and unmet precondition; +never report a skipped entry point as verified through another path. + +## Cleanup + +`verify.mjs` always kills the vite child it started and deletes the Chromium +profile, then confirms the artifacts still exist — a cleanup that eats the +proof fails the run. For manual launches: `Stop-Process` what you started +(PID, never by process name). Cleanup removes instances and scratch state +only; proof artifacts under +`.opencode/skills/verify-web/artifacts//` are retained. + +## Helpers + +All helpers are dependency-free `bun` scripts; invocations are shown above: + +- `scripts/verify.mjs` — full run: spawn server, doctor, drive, teardown. +- `scripts/doctor.mjs` — read-only health check of a running instance. +- `scripts/drive.mjs` — CDP drive + evidence capture for `--feature`. + +Feature recipes live in `features/`; read `features/README.md` first, then +the matching feature file, before driving. diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/axtree.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/axtree.json new file mode 100644 index 0000000..01a1743 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/axtree.json @@ -0,0 +1,11370 @@ +[ + { + "nodeId": "726", + "ignored": false, + "role": { + "type": "internalRole", + "value": "RootWebArea" + }, + "chromeRole": { + "type": "internalRole", + "value": 144 + }, + "name": { + "type": "computedString", + "value": "Protocol Visualizer — Simulate Opentrons protocols in VSCode", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "attribute", + "attribute": "aria-label", + "superseded": true + }, + { + "type": "relatedElement", + "value": { + "type": "computedString", + "value": "Protocol Visualizer — Simulate Opentrons protocols in VSCode" + }, + "nativeSource": "title" + } + ] + }, + "properties": [ + { + "name": "focusable", + "value": { + "type": "booleanOrUndefined", + "value": true + } + }, + { + "name": "url", + "value": { + "type": "string", + "value": "http://127.0.0.1:5181/" + } + } + ], + "childIds": ["831"], + "backendDOMNodeId": 726, + "frameId": "8AE6312B5CF350076BE20E6D026DCC9C" + }, + { + "nodeId": "831", + "ignored": true, + "ignoredReasons": [ + { + "name": "uninteresting", + "value": { + "type": "boolean", + "value": true + } + } + ], + "role": { + "type": "role", + "value": "none" + }, + "chromeRole": { + "type": "internalRole", + "value": 0 + }, + "parentId": "726", + "childIds": ["856"], + "backendDOMNodeId": 831 + }, + { + "nodeId": "856", + "ignored": true, + "ignoredReasons": [ + { + "name": "uninteresting", + "value": { + "type": "boolean", + "value": true + } + } + ], + "role": { + "type": "role", + "value": "none" + }, + "chromeRole": { + "type": "internalRole", + "value": 0 + }, + "parentId": "831", + "childIds": ["857"], + "backendDOMNodeId": 856 + }, + { + "nodeId": "857", + "ignored": false, + "role": { + "type": "role", + "value": "generic" + }, + "chromeRole": { + "type": "internalRole", + "value": 88 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + } + ] + }, + "properties": [], + "parentId": "856", + "childIds": ["858"], + "backendDOMNodeId": 857 + }, + { + "nodeId": "858", + "ignored": false, + "role": { + "type": "role", + "value": "generic" + }, + "chromeRole": { + "type": "internalRole", + "value": 88 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + } + ] + }, + "properties": [], + "parentId": "857", + "childIds": ["859", "877", "1062", "1068"], + "backendDOMNodeId": 858 + }, + { + "nodeId": "859", + "ignored": false, + "role": { + "type": "role", + "value": "banner" + }, + "chromeRole": { + "type": "internalRole", + "value": 94 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "attribute", + "attribute": "title" + } + ] + }, + "properties": [], + "parentId": "858", + "childIds": ["860"], + "backendDOMNodeId": 859 + }, + { + "nodeId": "877", + "ignored": false, + "role": { + "type": "role", + "value": "main" + }, + "chromeRole": { + "type": "internalRole", + "value": 118 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "attribute", + "attribute": "title" + } + ] + }, + "properties": [], + "parentId": "858", + "childIds": ["878", "894", "922", "927", "1025", "1030"], + "backendDOMNodeId": 877 + }, + { + "nodeId": "1062", + "ignored": false, + "role": { + "type": "role", + "value": "complementary" + }, + "chromeRole": { + "type": "internalRole", + "value": 22 + }, + "name": { + "type": "computedString", + "value": "Disclaimer", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "value": { + "type": "computedString", + "value": "Disclaimer" + }, + "attribute": "aria-label", + "attributeValue": { + "type": "string", + "value": "Disclaimer" + } + }, + { + "type": "attribute", + "attribute": "title", + "superseded": true + } + ] + }, + "properties": [], + "parentId": "858", + "childIds": ["1063"], + "backendDOMNodeId": 1062 + }, + { + "nodeId": "1068", + "ignored": false, + "role": { + "type": "role", + "value": "contentinfo" + }, + "chromeRole": { + "type": "internalRole", + "value": 85 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "attribute", + "attribute": "title" + } + ] + }, + "properties": [], + "parentId": "858", + "childIds": ["1069"], + "backendDOMNodeId": 1068 + }, + { + "nodeId": "860", + "ignored": true, + "ignoredReasons": [ + { + "name": "uninteresting", + "value": { + "type": "boolean", + "value": true + } + } + ], + "role": { + "type": "role", + "value": "none" + }, + "chromeRole": { + "type": "internalRole", + "value": 0 + }, + "parentId": "859", + "childIds": ["861", "868", "871"], + "backendDOMNodeId": 860 + }, + { + "nodeId": "861", + "ignored": false, + "role": { + "type": "role", + "value": "link" + }, + "chromeRole": { + "type": "internalRole", + "value": 110 + }, + "name": { + "type": "computedString", + "value": "Protocol Visualizer", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "contents", + "value": { + "type": "computedString", + "value": "Protocol Visualizer" + } + }, + { + "type": "attribute", + "attribute": "title", + "superseded": true + } + ] + }, + "properties": [ + { + "name": "focusable", + "value": { + "type": "booleanOrUndefined", + "value": true + } + }, + { + "name": "url", + "value": { + "type": "string", + "value": "http://127.0.0.1:5181/#top" + } + } + ], + "parentId": "860", + "childIds": ["867"], + "backendDOMNodeId": 861 + }, + { + "nodeId": "868", + "ignored": false, + "role": { + "type": "role", + "value": "navigation" + }, + "chromeRole": { + "type": "internalRole", + "value": 130 + }, + "name": { + "type": "computedString", + "value": "Section navigation", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "value": { + "type": "computedString", + "value": "Section navigation" + }, + "attribute": "aria-label", + "attributeValue": { + "type": "string", + "value": "Section navigation" + } + }, + { + "type": "attribute", + "attribute": "title", + "superseded": true + } + ] + }, + "properties": [], + "parentId": "860", + "childIds": ["869", "870"], + "backendDOMNodeId": 868 + }, + { + "nodeId": "871", + "ignored": true, + "ignoredReasons": [ + { + "name": "uninteresting", + "value": { + "type": "boolean", + "value": true + } + } + ], + "role": { + "type": "role", + "value": "none" + }, + "chromeRole": { + "type": "internalRole", + "value": 0 + }, + "parentId": "860", + "childIds": ["872", "873"], + "backendDOMNodeId": 871 + }, + { + "nodeId": "872", + "ignored": false, + "role": { + "type": "role", + "value": "link" + }, + "chromeRole": { + "type": "internalRole", + "value": 110 + }, + "name": { + "type": "computedString", + "value": "Request access", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "contents", + "value": { + "type": "computedString", + "value": "Request access" + } + }, + { + "type": "attribute", + "attribute": "title", + "superseded": true + } + ] + }, + "properties": [ + { + "name": "focusable", + "value": { + "type": "booleanOrUndefined", + "value": true + } + }, + { + "name": "url", + "value": { + "type": "string", + "value": "https://docs.google.com/forms/d/e/1FAIpQLSee8RapmgEfDE2QQtonDNmai44tuyidFQx5A4CiPfXO7_lFgQ/viewform?usp=publish-editor" + } + } + ], + "parentId": "871", + "childIds": ["737"], + "backendDOMNodeId": 872 + }, + { + "nodeId": "873", + "ignored": false, + "role": { + "type": "role", + "value": "button" + }, + "chromeRole": { + "type": "internalRole", + "value": 9 + }, + "name": { + "type": "computedString", + "value": "Switch to light theme", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "value": { + "type": "computedString", + "value": "Switch to light theme" + }, + "attribute": "aria-label", + "attributeValue": { + "type": "string", + "value": "Switch to light theme" + } + }, + { + "type": "relatedElement", + "superseded": true, + "nativeSource": "label" + }, + { + "type": "contents", + "superseded": true + }, + { + "type": "attribute", + "value": { + "type": "computedString", + "value": "Switch to light theme" + }, + "attribute": "title", + "attributeValue": { + "type": "string", + "value": "Switch to light theme" + }, + "superseded": true + } + ] + }, + "description": { + "type": "computedString", + "value": "Switch to light theme" + }, + "properties": [ + { + "name": "invalid", + "value": { + "type": "token", + "value": "false" + } + }, + { + "name": "focusable", + "value": { + "type": "booleanOrUndefined", + "value": true + } + } + ], + "parentId": "871", + "childIds": [], + "backendDOMNodeId": 873 + }, + { + "nodeId": "878", + "ignored": false, + "role": { + "type": "role", + "value": "generic" + }, + "chromeRole": { + "type": "internalRole", + "value": 211 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "attribute", + "attribute": "title" + } + ] + }, + "properties": [], + "parentId": "877", + "childIds": ["879"], + 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"sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + } + ] + }, + "properties": [], + "parentId": "1069", + "childIds": ["829"], + "backendDOMNodeId": 1070 + }, + { + "nodeId": "1071", + "ignored": false, + "role": { + "type": "role", + "value": "navigation" + }, + "chromeRole": { + "type": "internalRole", + "value": 130 + }, + "name": { + "type": "computedString", + "value": "External links", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "value": { + "type": "computedString", + "value": "External links" + }, + "attribute": "aria-label", + "attributeValue": { + "type": "string", + "value": "External links" + } + }, + { + "type": "attribute", + "attribute": "title", + "superseded": true + } + ] + }, + "properties": [], + "parentId": "1069", + "childIds": ["1072"], + "backendDOMNodeId": 1071 + }, + { + "nodeId": "867", + "ignored": 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a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/dom.html b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/dom.html new file mode 100644 index 0000000..ad39db5 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/dom.html @@ -0,0 +1,1089 @@ + + + + + + + + + + + + + + + Protocol Visualizer — Simulate Opentrons protocols in VSCode + + + + + + + + + + + + + + + +
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+ Protocol Visualizer + +
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Protocol Visualizer

+ Preview +
+

+ Simulate your Opentrons Python protocols and inspect deck + layout and liquid volumes in real time — without leaving + VSCode. +

+
+ Request accessInstallation guide ↓ +
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+ +
+
+
+
+

+ Everything you need to see your protocol run +

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    + Real-time Deck Visualization +

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    + Deck state and liquid volume changes render in real time + through an interactive panel while your protocol runs. +

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    Auto-analysis on Save

    +

    + The simulation automatically reruns whenever you save + changes (Ctrl+S / Cmd+S) to your protocol file. +

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    Runtime Parameters UI

    +

    + Input fields are generated for Opentrons Runtime + Parameters; hit Analyze to apply them — your original code + is never modified. +

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    Custom Labware Support

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    + Place custom labware definition files (.json) in the same + directory as your protocol file and they just work. +

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  • +
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    Pop-out Window

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    + Pop the panel out to its own window or drag the tab to + another monitor via VSCode's Auxiliary Window support. +

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    Step Jumper

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    + Enter any step number under Protocol Steps and hit Enter + to jump the visualization state instantly. +

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+ Protocol Visualizer visualizing an Opentrons protocol on a simulated deck +
+ Protocol Visualizer in action +
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+ Generate protocols with AI, verify with Protocol Visualizer +

+

+ Connect Protocol Visualizer to your LLM with + protocol-fix-loop. Generate Opentrons protocols with GitHub Copilot or Cursor, + then simulate and fix them in a visual feedback loop. +

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+ +
+ Generate a protocol from a prompt, then fix it while watching + the simulation +
+
+

How to use

+
    +
  1. Install VSCode or Cursor
    2. +
  2. + Install the skill: + npx skills add koji/protocol-fix-loop + (see + koji/protocol-fix-loop) +
    3. +
  3. + Install the Protocol Visualizer extension (see + Installation guide) +
    4. +
  4. + Use + /protocol-fix-loop + in chat and add your prompt to generate a protocol +
    5. +
+
+
+
+
+

Want to try the extension?

+

+ Request access via our form — requests are handled individually. +

+ Request access +
+
+
+
+

Installation

+
+
+

Prerequisites

+
    +
  • + Python 3.8 or later, with + python3 available in PATH +
    • +
  • + The opentrons Python package: + pip install opentrons +
    • +
  • + For OT-2 use + pip install opentrons==9.0.0 + (opentrons 9.1.0+ dropped OT-2 support) +
    • +
  • + Select the matching Python interpreter in VSCode via + Python: Select Interpreter +
    • +
  • + Using both Flex and OT-2? Keep them in a separate virtual + environment each and switch per protocol. +
    • +
+
+
+

+ Method A: Command Palette +

+
    +
  1. + Open the Command Palette (Cmd+Shift+P / + Ctrl+Shift+P) +
    2. +
  2. + Select Extensions: Install from VSIX... +
    3. +
  3. Choose the downloaded .vsix file
    4. +
+
+
+

Method B: Command line

+ 
code --install-extension protocol-visualizer.vsix
+
+
+
+
+
+ +
+
+ MIT License © 2026 Koji Kanao + +
+
+
+
+ + + diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/result.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/result.json new file mode 100644 index 0000000..5eb66ca --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/result.json @@ -0,0 +1,55 @@ +{ + "feature": "ai-workflow", + "url": "http://127.0.0.1:5181/", + "passed": 7, + "total": 7, + "ok": true, + "checks": [ + { + "id": "ai-region", + "pass": true, + "value": true, + "error": null + }, + { + "id": "ai-heading", + "pass": true, + "value": "Generate protocols with AI, verify with Protocol Visualizer", + "error": null + }, + { + "id": "ai-video", + "pass": true, + "value": { + "src": "https://github.com/user-attachments/assets/812fbcdf-a84a-49fd-b631-ae925b64dddf", + "controls": true + }, + "error": null + }, + { + "id": "ai-skill-command", + "pass": true, + "value": true, + "error": null + }, + { + "id": "ai-slash-command", + "pass": true, + "value": true, + "error": null + }, + { + "id": "ai-skill-links", + "pass": true, + "value": 2, + "error": null + }, + { + "id": "ai-install-link", + "pass": true, + "value": true, + "error": null + } + ], + "finishedAt": "2026-09-16T07:56:13.724Z" +} diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/screenshot.png b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/screenshot.png new file mode 100644 index 0000000..11d7248 Binary files /dev/null and b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/screenshot.png differ diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/axtree.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/axtree.json new file mode 100644 index 0000000..e5a1905 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/axtree.json 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"childIds": [] + }, + { + "nodeId": "-1000000276", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Runtime Parameters; hit Analyze to apply " + }, + "properties": [], + "parentId": "388", + "childIds": [] + }, + { + "nodeId": "-1000000277", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "them — your original code is never " + }, + "properties": [], + "parentId": "388", + "childIds": [] + }, + { + "nodeId": "-1000000278", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "modified." + }, + "properties": [], + "parentId": 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a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/dom.html b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/dom.html new file mode 100644 index 0000000..ad39db5 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/dom.html @@ -0,0 +1,1089 @@ + + + + + + + + + + + + + + + Protocol Visualizer — Simulate Opentrons protocols in VSCode + + + + + + + + + + + + + + + +
+
+
+
+ Protocol Visualizer + +
+ Request access +
+
+
+
+
+
+
+
+

Protocol Visualizer

+ Preview +
+

+ Simulate your Opentrons Python protocols and inspect deck + layout and liquid volumes in real time — without leaving + VSCode. +

+
+ Request accessInstallation guide ↓ +
+
+ +
+
+
+
+

+ Everything you need to see your protocol run +

+
    +
  • +
    +

    + Real-time Deck Visualization +

    +

    + Deck state and liquid volume changes render in real time + through an interactive panel while your protocol runs. +

    +
    +
    • +
  • +
    +

    Auto-analysis on Save

    +

    + The simulation automatically reruns whenever you save + changes (Ctrl+S / Cmd+S) to your protocol file. +

    +
    +
    • +
  • +
    +

    Runtime Parameters UI

    +

    + Input fields are generated for Opentrons Runtime + Parameters; hit Analyze to apply them — your original code + is never modified. +

    +
    +
    • +
  • +
    +

    Custom Labware Support

    +

    + Place custom labware definition files (.json) in the same + directory as your protocol file and they just work. +

    +
    +
    • +
  • +
    +

    Pop-out Window

    +

    + Pop the panel out to its own window or drag the tab to + another monitor via VSCode's Auxiliary Window support. +

    +
    +
    • +
  • +
    +

    Step Jumper

    +

    + Enter any step number under Protocol Steps and hit Enter + to jump the visualization state instantly. +

    +
    +
    • +
+
+
+
+
+
+ Protocol Visualizer visualizing an Opentrons protocol on a simulated deck +
+ Protocol Visualizer in action +
+
+
+
+
+
+

+ Generate protocols with AI, verify with Protocol Visualizer +

+

+ Connect Protocol Visualizer to your LLM with + protocol-fix-loop. Generate Opentrons protocols with GitHub Copilot or Cursor, + then simulate and fix them in a visual feedback loop. +

+
+ +
+ Generate a protocol from a prompt, then fix it while watching + the simulation +
+
+

How to use

+
    +
  1. Install VSCode or Cursor
    2. +
  2. + Install the skill: + npx skills add koji/protocol-fix-loop + (see + koji/protocol-fix-loop) +
    3. +
  3. + Install the Protocol Visualizer extension (see + Installation guide) +
    4. +
  4. + Use + /protocol-fix-loop + in chat and add your prompt to generate a protocol +
    5. +
+
+
+
+
+

Want to try the extension?

+

+ Request access via our form — requests are handled individually. +

+ Request access +
+
+
+
+

Installation

+
+
+

Prerequisites

+
    +
  • + Python 3.8 or later, with + python3 available in PATH +
    • +
  • + The opentrons Python package: + pip install opentrons +
    • +
  • + For OT-2 use + pip install opentrons==9.0.0 + (opentrons 9.1.0+ dropped OT-2 support) +
    • +
  • + Select the matching Python interpreter in VSCode via + Python: Select Interpreter +
    • +
  • + Using both Flex and OT-2? Keep them in a separate virtual + environment each and switch per protocol. +
    • +
+
+
+

+ Method A: Command Palette +

+
    +
  1. + Open the Command Palette (Cmd+Shift+P / + Ctrl+Shift+P) +
    2. +
  2. + Select Extensions: Install from VSIX... +
    3. +
  3. Choose the downloaded .vsix file
    4. +
+
+
+

Method B: Command line

+ 
code --install-extension protocol-visualizer.vsix
+
+
+
+
+
+ +
+
+ MIT License © 2026 Koji Kanao + +
+
+
+
+ + + diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/result.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/result.json new file mode 100644 index 0000000..cb9001d --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/result.json @@ -0,0 +1,35 @@ +{ + "feature": "features-grid", + "url": "http://127.0.0.1:5181/", + "passed": 3, + "total": 3, + "ok": true, + "checks": [ + { + "id": "features-region", + "pass": true, + "value": true, + "error": null + }, + { + "id": "features-heading", + "pass": true, + "value": "Everything you need to see your protocol run", + "error": null + }, + { + "id": "features-cards", + "pass": true, + "value": [ + "Real-time Deck Visualization", + "Auto-analysis on Save", + "Runtime Parameters UI", + "Custom Labware Support", + "Pop-out Window", + "Step Jumper" + ], + "error": null + } + ], + "finishedAt": "2026-09-16T07:56:12.143Z" +} diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/screenshot.png b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/screenshot.png new file mode 100644 index 0000000..70d644e Binary files /dev/null and b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/screenshot.png differ diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/axtree.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/axtree.json new file mode 100644 index 0000000..6ce5d9f --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/axtree.json @@ -0,0 +1,11360 @@ +[ + { + "nodeId": "2", + "ignored": false, + "role": { + "type": "internalRole", + "value": "RootWebArea" + }, + "chromeRole": { + "type": "internalRole", + "value": 144 + }, + "name": { + "type": "computedString", + "value": "Protocol Visualizer — Simulate Opentrons protocols in VSCode", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "attribute", + "attribute": "aria-label", + "superseded": true + }, + { + "type": "relatedElement", + "value": { + "type": "computedString", + "value": "Protocol Visualizer — Simulate Opentrons protocols in VSCode" + }, + "nativeSource": "title" + } + ] + }, + "properties": [ + { + "name": "focusable", + "value": { + "type": "booleanOrUndefined", + "value": true + } + }, + { + "name": "url", + "value": { + "type": "string", + "value": "http://127.0.0.1:5181/" + } + } + ], + "childIds": ["19"], + "backendDOMNodeId": 2, + "frameId": "8AE6312B5CF350076BE20E6D026DCC9C" + }, + { + "nodeId": "19", + "ignored": true, + "ignoredReasons": [ + { + "name": "uninteresting", + "value": { + "type": "boolean", + "value": true + } + } + ], + "role": { + "type": "role", + "value": "none" + }, + "chromeRole": { + "type": "internalRole", + "value": 0 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"value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "file" + }, + "properties": [], + "parentId": "360", + "childIds": [] + }, + { + "nodeId": "-1000000124", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "code --install-extension protocol-visualizer.vsix" + }, + "properties": [], + "parentId": "362", + "childIds": [] + }, + { + "nodeId": "-1000000013", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Real-time Deck Visualization" + }, + "properties": [], + "parentId": "277", + "childIds": [] + }, + { + "nodeId": "-1000000014", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Deck state and liquid volume changes " + }, + "properties": [], + "parentId": "278", + "childIds": [] + }, + { + "nodeId": "-1000000015", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "render in real time through an interactive " + }, + "properties": [], + "parentId": "278", + "childIds": [] + }, + { + "nodeId": "-1000000016", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "panel while your protocol runs." + }, + "properties": [], + "parentId": "278", + "childIds": [] + }, + { + "nodeId": "-1000000017", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Auto-analysis on Save" + }, + "properties": [], + "parentId": "279", + "childIds": [] + }, + { + "nodeId": "-1000000018", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "The simulation automatically reruns " + }, + "properties": [], + "parentId": "280", + "childIds": [] + }, + { + "nodeId": "-1000000019", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "whenever you save changes (Ctrl+S / " + }, + "properties": [], + "parentId": "280", + "childIds": [] + }, + { + "nodeId": "-1000000020", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Cmd+S) to your protocol file." + }, + "properties": [], + "parentId": "280", + "childIds": [] + }, + { + "nodeId": "-1000000021", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Runtime Parameters UI" + }, + "properties": [], + "parentId": "281", + "childIds": [] + }, + { + "nodeId": "-1000000022", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Input fields are generated for Opentrons " + }, + "properties": [], + "parentId": "282", + "childIds": [] + }, + { + "nodeId": "-1000000023", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Runtime Parameters; hit Analyze to apply " + }, + "properties": [], + "parentId": "282", + "childIds": [] + }, + { + "nodeId": "-1000000024", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "them — your original code is never " + }, + "properties": [], + "parentId": "282", + "childIds": [] + }, + { + "nodeId": "-1000000025", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "modified." + }, + "properties": [], + "parentId": "282", + "childIds": [] + }, + { + "nodeId": "-1000000026", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Custom Labware Support" + }, + "properties": [], + "parentId": "283", + "childIds": [] + }, + { + "nodeId": "-1000000027", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Place custom labware definition files (.json) " + }, + "properties": [], + "parentId": "284", + "childIds": [] + }, + { + "nodeId": "-1000000028", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "in the same directory as your protocol file " + }, + "properties": [], + "parentId": "284", + "childIds": [] + }, + { + "nodeId": "-1000000029", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "and they just work." + }, + "properties": [], + "parentId": "284", + "childIds": [] + }, + { + "nodeId": "-1000000030", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Pop-out Window" + }, + "properties": [], + "parentId": "285", + "childIds": [] + }, + { + "nodeId": "-1000000031", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Pop the panel out to its own window or " + }, + "properties": [], + "parentId": "286", + "childIds": [] + }, + { + "nodeId": "-1000000032", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "drag the tab to another monitor via " + }, + "properties": [], + "parentId": "286", + "childIds": [] + }, + { + "nodeId": "-1000000033", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "VSCode's Auxiliary Window support." + }, + "properties": [], + "parentId": "286", + "childIds": [] + }, + { + "nodeId": "-1000000034", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Step Jumper" + }, + "properties": [], + "parentId": 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"role": { + "type": "role", + "value": "generic" + }, + "chromeRole": { + "type": "internalRole", + "value": 88 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + } + ] + }, + "properties": [], + "parentId": "125", + "childIds": [], + "backendDOMNodeId": 126 + }, + { + "nodeId": "128", + "ignored": false, + "role": { + "type": "role", + "value": "generic" + }, + "chromeRole": { + "type": "internalRole", + "value": 88 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + } + ] + }, + "properties": [], + "parentId": "127", + "childIds": [], + "backendDOMNodeId": 128 + } +] diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/dom.html b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/dom.html new file mode 100644 index 0000000..ad39db5 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/dom.html @@ -0,0 +1,1089 @@ + + + + + + + + + + + + + + + Protocol Visualizer — Simulate Opentrons protocols in VSCode + + + + + + + + + + + + + + + +
+
+
+
+ Protocol Visualizer + +
+ Request access +
+
+
+
+
+
+
+
+

Protocol Visualizer

+ Preview +
+

+ Simulate your Opentrons Python protocols and inspect deck + layout and liquid volumes in real time — without leaving + VSCode. +

+
+ Request accessInstallation guide ↓ +
+
+ +
+
+
+
+

+ Everything you need to see your protocol run +

+
    +
  • +
    +

    + Real-time Deck Visualization +

    +

    + Deck state and liquid volume changes render in real time + through an interactive panel while your protocol runs. +

    +
    +
    • +
  • +
    +

    Auto-analysis on Save

    +

    + The simulation automatically reruns whenever you save + changes (Ctrl+S / Cmd+S) to your protocol file. +

    +
    +
    • +
  • +
    +

    Runtime Parameters UI

    +

    + Input fields are generated for Opentrons Runtime + Parameters; hit Analyze to apply them — your original code + is never modified. +

    +
    +
    • +
  • +
    +

    Custom Labware Support

    +

    + Place custom labware definition files (.json) in the same + directory as your protocol file and they just work. +

    +
    +
    • +
  • +
    +

    Pop-out Window

    +

    + Pop the panel out to its own window or drag the tab to + another monitor via VSCode's Auxiliary Window support. +

    +
    +
    • +
  • +
    +

    Step Jumper

    +

    + Enter any step number under Protocol Steps and hit Enter + to jump the visualization state instantly. +

    +
    +
    • +
+
+
+
+
+
+ Protocol Visualizer visualizing an Opentrons protocol on a simulated deck +
+ Protocol Visualizer in action +
+
+
+
+
+
+

+ Generate protocols with AI, verify with Protocol Visualizer +

+

+ Connect Protocol Visualizer to your LLM with + protocol-fix-loop. Generate Opentrons protocols with GitHub Copilot or Cursor, + then simulate and fix them in a visual feedback loop. +

+
+ +
+ Generate a protocol from a prompt, then fix it while watching + the simulation +
+
+

How to use

+
    +
  1. Install VSCode or Cursor
    2. +
  2. + Install the skill: + npx skills add koji/protocol-fix-loop + (see + koji/protocol-fix-loop) +
    3. +
  3. + Install the Protocol Visualizer extension (see + Installation guide) +
    4. +
  4. + Use + /protocol-fix-loop + in chat and add your prompt to generate a protocol +
    5. +
+
+
+
+
+

Want to try the extension?

+

+ Request access via our form — requests are handled individually. +

+ Request access +
+
+
+
+

Installation

+
+
+

Prerequisites

+
    +
  • + Python 3.8 or later, with + python3 available in PATH +
    • +
  • + The opentrons Python package: + pip install opentrons +
    • +
  • + For OT-2 use + pip install opentrons==9.0.0 + (opentrons 9.1.0+ dropped OT-2 support) +
    • +
  • + Select the matching Python interpreter in VSCode via + Python: Select Interpreter +
    • +
  • + Using both Flex and OT-2? Keep them in a separate virtual + environment each and switch per protocol. +
    • +
+
+
+

+ Method A: Command Palette +

+
    +
  1. + Open the Command Palette (Cmd+Shift+P / + Ctrl+Shift+P) +
    2. +
  2. + Select Extensions: Install from VSIX... +
    3. +
  3. Choose the downloaded .vsix file
    4. +
+
+
+

Method B: Command line

+ 
code --install-extension protocol-visualizer.vsix
+
+
+
+
+
+ +
+
+ MIT License © 2026 Koji Kanao + +
+
+
+
+ + + diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/result.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/result.json new file mode 100644 index 0000000..2c7f913 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/result.json @@ -0,0 +1,41 @@ +{ + "feature": "hero", + "url": "http://127.0.0.1:5181/", + "passed": 4, + "total": 4, + "ok": true, + "checks": [ + { + "id": "hero-headline", + "pass": true, + "value": "Protocol Visualizer", + "error": null + }, + { + "id": "hero-tagline", + "pass": true, + "value": "Simulate your Opentrons Python protocols and inspect deck layout and liquid volumes in real time — without leaving VSCode.", + "error": null + }, + { + "id": "hero-request-access-links", + "pass": true, + "value": { + "count": 3, + "hrefs": [ + "https://docs.google.com/forms/d/e/1FAIpQLSee8RapmgEfDE2QQtonDNmai44tuyidFQx5A4CiPfXO7_lFgQ/viewform?usp=publish-editor", + 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"properties": [], + "parentId": "1594", + "childIds": [] + }, + { + "nodeId": "-1000001152", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Deck state and liquid volume changes " + }, + "properties": [], + "parentId": "1595", + "childIds": [] + }, + { + "nodeId": "-1000001153", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "render in real time through an interactive " + }, + "properties": [], + "parentId": "1595", + "childIds": [] + }, + { + "nodeId": "-1000001154", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "panel while your protocol runs." + }, + "properties": [], + "parentId": "1595", + "childIds": [] + }, + { + "nodeId": "-1000001155", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Auto-analysis on Save" + }, + "properties": [], + "parentId": "1596", + "childIds": [] + }, + { + "nodeId": "-1000001156", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "The simulation automatically reruns " + }, + "properties": [], + "parentId": "1597", + "childIds": [] + }, + { + "nodeId": "-1000001157", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "whenever you save changes (Ctrl+S / " + }, + "properties": [], + "parentId": "1597", + "childIds": [] + }, + { + "nodeId": "-1000001158", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Cmd+S) to your protocol file." + }, + "properties": [], + "parentId": "1597", + "childIds": [] + }, + { + "nodeId": "-1000001159", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Runtime Parameters UI" + }, + "properties": [], + "parentId": "1598", + "childIds": [] + }, + { + "nodeId": "-1000001160", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Input fields are generated for Opentrons " + }, + "properties": [], + "parentId": "1599", + "childIds": [] + }, + { + "nodeId": "-1000001161", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Runtime Parameters; hit Analyze to apply " + }, + "properties": [], + "parentId": "1599", + "childIds": [] + }, + { + "nodeId": "-1000001162", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "them — your original code is never " + }, + "properties": [], + "parentId": "1599", + "childIds": [] + }, + { + "nodeId": "-1000001163", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "modified." + }, + "properties": [], + "parentId": "1599", + "childIds": [] + }, + { + "nodeId": "-1000001164", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Custom Labware Support" + }, + "properties": [], + "parentId": "1600", + "childIds": [] + }, + { + "nodeId": "-1000001165", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Place custom labware definition files (.json) " + }, + "properties": [], + "parentId": "1601", + "childIds": [] + }, + { + "nodeId": "-1000001166", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "in the same directory as your protocol file " + }, + "properties": [], + "parentId": "1601", + "childIds": [] + }, + { + "nodeId": "-1000001167", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "and they just work." + }, + "properties": [], + "parentId": "1601", + "childIds": [] + }, + { + "nodeId": "-1000001168", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Pop-out Window" + }, + "properties": [], + "parentId": "1602", + "childIds": [] + }, + { + "nodeId": "-1000001169", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Pop the panel out to its own window or " + }, + "properties": [], + "parentId": "1603", + "childIds": [] + }, + { + "nodeId": "-1000001170", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "drag the tab to another monitor via " + }, + "properties": [], + "parentId": "1603", + "childIds": [] + }, + { + "nodeId": "-1000001171", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "VSCode's Auxiliary Window support." + }, + "properties": [], + "parentId": "1603", + "childIds": [] + }, + { + "nodeId": "-1000001172", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Step Jumper" + }, + "properties": [], + "parentId": "1604", + "childIds": [] + }, + { + "nodeId": "-1000001173", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Enter any step number under Protocol Steps " + }, + "properties": [], + "parentId": "1605", + "childIds": [] + }, + { + "nodeId": "-1000001174", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "and hit Enter to jump the visualization state " + }, + "properties": [], + "parentId": "1605", + "childIds": [] + }, + { + "nodeId": "-1000001175", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "instantly." + }, + "properties": [], + "parentId": "1605", + "childIds": [] + }, + { + "nodeId": "1930", + "ignored": false, + "role": { + "type": "role", + "value": "generic" + }, + "chromeRole": { + "type": "internalRole", + "value": 88 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + } + ] + }, + "properties": [], + "parentId": "1929", + "childIds": ["1931"], + "backendDOMNodeId": 1930 + }, + { + "nodeId": "1932", + "ignored": false, + "role": { + "type": "role", + "value": "generic" + }, + "chromeRole": { + "type": "internalRole", + "value": 88 + }, + "name": { + "type": "computedString", + "value": "", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + } + ] + }, + "properties": [], + "parentId": "1929", + "childIds": ["1933"], + "backendDOMNodeId": 1932 + }, + { + "nodeId": "-1000001244", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "Extensions: Install " + }, + "properties": [], + "parentId": "1673", + "childIds": [] + }, + { + "nodeId": "-1000001245", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + "name": { + "type": "computedString", + "value": "from VSIX..." + }, + "properties": [], + "parentId": "1673", + "childIds": [] + }, + { + "nodeId": "-1000001247", + "ignored": false, + "role": { + "type": "internalRole", + "value": "InlineTextBox" + }, + "chromeRole": { + "type": "internalRole", + "value": 101 + }, + 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"1932", + "childIds": [], + "backendDOMNodeId": 1933 + } +] diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/dom.html b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/dom.html new file mode 100644 index 0000000..ad39db5 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/dom.html @@ -0,0 +1,1089 @@ + + + + + + + + + + + + + + + Protocol Visualizer — Simulate Opentrons protocols in VSCode + + + + + + + + + + + + + + + +
+
+
+
+ Protocol Visualizer + +
+ Request access +
+
+
+
+
+
+
+
+

Protocol Visualizer

+ Preview +
+

+ Simulate your Opentrons Python protocols and inspect deck + layout and liquid volumes in real time — without leaving + VSCode. +

+
+ Request accessInstallation guide ↓ +
+
+ +
+
+
+
+

+ Everything you need to see your protocol run +

+
    +
  • +
    +

    + Real-time Deck Visualization +

    +

    + Deck state and liquid volume changes render in real time + through an interactive panel while your protocol runs. +

    +
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    • +
  • +
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    Auto-analysis on Save

    +

    + The simulation automatically reruns whenever you save + changes (Ctrl+S / Cmd+S) to your protocol file. +

    +
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    • +
  • +
    +

    Runtime Parameters UI

    +

    + Input fields are generated for Opentrons Runtime + Parameters; hit Analyze to apply them — your original code + is never modified. +

    +
    +
    • +
  • +
    +

    Custom Labware Support

    +

    + Place custom labware definition files (.json) in the same + directory as your protocol file and they just work. +

    +
    +
    • +
  • +
    +

    Pop-out Window

    +

    + Pop the panel out to its own window or drag the tab to + another monitor via VSCode's Auxiliary Window support. +

    +
    +
    • +
  • +
    +

    Step Jumper

    +

    + Enter any step number under Protocol Steps and hit Enter + to jump the visualization state instantly. +

    +
    +
    • +
+
+
+
+
+
+ Protocol Visualizer visualizing an Opentrons protocol on a simulated deck +
+ Protocol Visualizer in action +
+
+
+
+
+
+

+ Generate protocols with AI, verify with Protocol Visualizer +

+

+ Connect Protocol Visualizer to your LLM with + protocol-fix-loop. Generate Opentrons protocols with GitHub Copilot or Cursor, + then simulate and fix them in a visual feedback loop. +

+
+ +
+ Generate a protocol from a prompt, then fix it while watching + the simulation +
+
+

How to use

+
    +
  1. Install VSCode or Cursor
    2. +
  2. + Install the skill: + npx skills add koji/protocol-fix-loop + (see + koji/protocol-fix-loop) +
    3. +
  3. + Install the Protocol Visualizer extension (see + Installation guide) +
    4. +
  4. + Use + /protocol-fix-loop + in chat and add your prompt to generate a protocol +
    5. +
+
+
+
+
+

Want to try the extension?

+

+ Request access via our form — requests are handled individually. +

+ Request access +
+
+
+
+

Installation

+
+
+

Prerequisites

+
    +
  • + Python 3.8 or later, with + python3 available in PATH +
    • +
  • + The opentrons Python package: + pip install opentrons +
    • +
  • + For OT-2 use + pip install opentrons==9.0.0 + (opentrons 9.1.0+ dropped OT-2 support) +
    • +
  • + Select the matching Python interpreter in VSCode via + Python: Select Interpreter +
    • +
  • + Using both Flex and OT-2? Keep them in a separate virtual + environment each and switch per protocol. +
    • +
+
+
+

+ Method A: Command Palette +

+
    +
  1. + Open the Command Palette (Cmd+Shift+P / + Ctrl+Shift+P) +
    2. +
  2. + Select Extensions: Install from VSIX... +
    3. +
  3. Choose the downloaded .vsix file
    4. +
+
+
+

Method B: Command line

+ 
code --install-extension protocol-visualizer.vsix
+
+
+
+
+
+ +
+
+ MIT License © 2026 Koji Kanao + +
+
+
+
+ + + diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/result.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/result.json new file mode 100644 index 0000000..773f3b3 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/result.json @@ -0,0 +1,47 @@ +{ + "feature": "install-guide", + "url": "http://127.0.0.1:5181/", + "passed": 5, + "total": 5, + "ok": true, + "checks": [ + { + "id": "install-region", + "pass": true, + "value": true, + "error": null + }, + { + "id": "install-prereqs", + "pass": true, + "value": "InstallationPrerequisitesPython 3.8 or later, with python3 available in PATHThe opentrons Python package: pip install opentronsFor OT-2 use pip install opentrons==9.0.0 (opentrons 9.1.0+ dropped OT-2 support)Select the matching Python interpreter in VSCode via Python: Select InterpreterUsing both Flex and OT-2? Keep them in a separate virtual environment each and switch per protocol.Method A: Command PaletteOpen the Command Palette (Cmd+Shift+P / Ctrl+Shift+P)Select Extensions: Install from VSIX...Choose the downloaded .vsix fileMethod B: Command linecode --install-extension protocol-visualizer.vsix", + "error": null + }, + { + "id": "install-cli-method", + "pass": true, + "value": true, + "error": null + }, + { + "id": "header-nav", + "pass": true, + "value": [ + ["Features", "#features"], + ["Install", "#install"] + ], + "error": null + }, + { + "id": "anchor-navigation", + "pass": true, + "value": { + "hash": "#install", + "top": 0, + "vh": 749 + }, + "error": null + } + ], + "finishedAt": "2026-09-16T07:56:17.778Z" +} diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/screenshot.png b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/screenshot.png new file mode 100644 index 0000000..f91c499 Binary files /dev/null and b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/screenshot.png differ diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/axtree.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/axtree.json new file mode 100644 index 0000000..3990a35 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/axtree.json @@ -0,0 +1,11379 @@ +[ + { + "nodeId": "1086", + "ignored": false, + "role": { + "type": "internalRole", + "value": "RootWebArea" + }, + "chromeRole": { + "type": "internalRole", + "value": 144 + }, + "name": { + "type": "computedString", + "value": "Protocol Visualizer — Simulate Opentrons protocols in VSCode", + "sources": [ + { + "type": "relatedElement", + "attribute": "aria-labelledby" + }, + { + "type": "attribute", + "attribute": "aria-label" + }, + { + "type": "attribute", + "attribute": "aria-label", + "superseded": true + }, + { + "type": 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+
+
+
+ Protocol Visualizer + +
+ Request access +
+
+
+
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Protocol Visualizer

+ Preview +
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+ Simulate your Opentrons Python protocols and inspect deck + layout and liquid volumes in real time — without leaving + VSCode. +

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+ Request accessInstallation guide ↓ +
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+ Everything you need to see your protocol run +

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    + Real-time Deck Visualization +

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    + Deck state and liquid volume changes render in real time + through an interactive panel while your protocol runs. +

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    Auto-analysis on Save

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    + The simulation automatically reruns whenever you save + changes (Ctrl+S / Cmd+S) to your protocol file. +

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    Runtime Parameters UI

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    + Input fields are generated for Opentrons Runtime + Parameters; hit Analyze to apply them — your original code + is never modified. +

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    Custom Labware Support

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    + Place custom labware definition files (.json) in the same + directory as your protocol file and they just work. +

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    Pop-out Window

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    + Pop the panel out to its own window or drag the tab to + another monitor via VSCode's Auxiliary Window support. +

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    Step Jumper

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    + Enter any step number under Protocol Steps and hit Enter + to jump the visualization state instantly. +

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+ Protocol Visualizer visualizing an Opentrons protocol on a simulated deck +
+ Protocol Visualizer in action +
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+ Generate protocols with AI, verify with Protocol Visualizer +

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+ Connect Protocol Visualizer to your LLM with + protocol-fix-loop. Generate Opentrons protocols with GitHub Copilot or Cursor, + then simulate and fix them in a visual feedback loop. +

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+ Generate a protocol from a prompt, then fix it while watching + the simulation +
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How to use

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  1. Install VSCode or Cursor
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  2. + Install the skill: + npx skills add koji/protocol-fix-loop + (see + koji/protocol-fix-loop) +
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  3. + Install the Protocol Visualizer extension (see + Installation guide) +
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  4. + Use + /protocol-fix-loop + in chat and add your prompt to generate a protocol +
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Want to try the extension?

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+ Request access via our form — requests are handled individually. +

+ Request access +
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Installation

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Prerequisites

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  • + Python 3.8 or later, with + python3 available in PATH +
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  • + The opentrons Python package: + pip install opentrons +
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  • + For OT-2 use + pip install opentrons==9.0.0 + (opentrons 9.1.0+ dropped OT-2 support) +
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  • + Select the matching Python interpreter in VSCode via + Python: Select Interpreter +
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  • + Using both Flex and OT-2? Keep them in a separate virtual + environment each and switch per protocol. +
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+ Method A: Command Palette +

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  1. + Open the Command Palette (Cmd+Shift+P / + Ctrl+Shift+P) +
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  2. + Select Extensions: Install from VSIX... +
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  3. Choose the downloaded .vsix file
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Method B: Command line

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code --install-extension protocol-visualizer.vsix
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+ MIT License © 2026 Koji Kanao + +
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+ + + diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/result.json b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/result.json new file mode 100644 index 0000000..ab1f1c5 --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/result.json @@ -0,0 +1,37 @@ +{ + "feature": "theme-toggle", + "url": "http://127.0.0.1:5181/", + "passed": 3, + "total": 3, + "ok": true, + "checks": [ + { + "id": "toggle-present", + "pass": true, + "value": "Switch to light theme", + "error": null + }, + { + "id": "toggle-flips-theme", + "pass": true, + "value": { + "before": "dark", + "after": "light", + "stored": "light" + }, + "error": null + }, + { + "id": "toggle-restores", + "pass": true, + "value": { + "theme": "dark", + "stored": "dark", + "label": "Switch to light theme", + "flipped": "light" + }, + "error": null + } + ], + "finishedAt": "2026-09-16T07:56:16.174Z" +} diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/screenshot.png b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/screenshot.png new file mode 100644 index 0000000..3fb5fd2 Binary files /dev/null and b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/screenshot.png differ diff --git a/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/vite-server.log b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/vite-server.log new file mode 100644 index 0000000..c7dbace --- /dev/null +++ b/.opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/vite-server.log @@ -0,0 +1,13 @@ + + VITE v8.2.2 ready in 192 ms + + ➜ Local: http://127.0.0.1:5181/ +3:56:10 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/dom.html +3:56:10 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/hero/dom.html +3:56:12 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/dom.html +3:56:12 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/features-grid/dom.html +3:56:13 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/dom.html +3:56:13 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/ai-workflow/dom.html +3:56:16 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/theme-toggle/dom.html +3:56:17 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/dom.html +3:56:17 AM [vite] (client) page reload .opencode/skills/verify-web/artifacts/2026-09-16T07-56-03-875Z/install-guide/dom.html diff --git a/.opencode/skills/verify-web/features/README.md b/.opencode/skills/verify-web/features/README.md new file mode 100644 index 0000000..32dbd84 --- /dev/null +++ b/.opencode/skills/verify-web/features/README.md @@ -0,0 +1,47 @@ +# protocol-visualizer-web verification map + +This directory is the maintained source for verifying the user-facing behavior of the Protocol Visualizer landing page. Read this index before driving the app, then use the matching feature file as the recipe. + +## Baseline preconditions + +- Serve the app at `http://127.0.0.1:5173` (or `$VERIFY_PORT`) via `scripts/verify.mjs`, which owns the server for the run. +- Run `scripts/doctor.mjs` against the URL and require `"ok": true` before driving. +- Each drive uses a fresh Chromium profile; `localStorage` starts empty and the color theme starts from the browser default. +- Never drive an instance that was not started by this verification run. + +## Driving conventions + +- Start every recipe from a fresh page load unless its preconditions say otherwise. +- Prefer ARIA roles and accessible names over CSS selectors or DOM position. +- Treat every command as literal. Keep quoted names, URLs, and flags unchanged. +- Run browser actions through `scripts/drive.mjs --feature `. +- The theme-toggle recipe restores the original theme. Do not remove proof artifacts during cleanup. + +## Proof and skip reporting + +- Capture the user action and the resulting state, not only the final screen. +- UI proof includes the rendered DOM, the accessibility tree, and a screenshot with the app identity visible. +- State-change proof (theme toggle) includes the before/after values plus the persisted value (`localStorage`). +- Mutation proof restores the prior state in-page (theme is clicked back). +- Record the feature ID and entry point used with every artifact. +- Report an unreachable path with the attempted command and the unmet precondition. +- Do not report a skipped entry point as verified through a different path. + +## Feature entry contract + +Each feature file starts with an H1 title and one paragraph describing the user-visible behavior. It then uses exactly four H2 sections in this order. + +1. `Sub-features` lists short IDs with one line for each behavior. +2. `How to get to it (user POV)` lists every user entry point. +3. `Driving it with drive.mjs` starts with `Preconditions:` and uses labeled bullets that pair each user action with an exact command and observable result. +4. `Gotchas` lists traps that can waste or invalidate a verification run. + +Keep implementation details out of the map. Name only user paths, stable handles, required state, commands, and observable proof. + +## Features + +- [Hero](./hero.md) covers headline, tagline, request-access CTAs, and the install-guide link. +- [Features grid](./features-grid.md) covers the six feature cards under "Everything you need to see your protocol run". +- [AI workflow](./ai-workflow.md) covers the protocol-fix-loop video, skill command, and repo links. +- [Theme toggle](./theme-toggle.md) covers dark/light switching and persistence. +- [Install guide](./install-guide.md) covers prerequisites, install methods, and header anchor navigation. diff --git a/.opencode/skills/verify-web/features/ai-workflow.md b/.opencode/skills/verify-web/features/ai-workflow.md new file mode 100644 index 0000000..1e3a2c8 --- /dev/null +++ b/.opencode/skills/verify-web/features/ai-workflow.md @@ -0,0 +1,36 @@ +# AI workflow + +AI workflow shows how `protocol-fix-loop` connects Protocol Visualizer to an LLM: an intro paragraph naming GitHub Copilot and Cursor, a demo video, and a four-step `How to use` list with the skill install command and the `/protocol-fix-loop` chat command. + +## Sub-features + +- `ai-intro` links `protocol-fix-loop` to the skill repo and names Copilot/Cursor. +- `ai-video` embeds the demo video with controls. +- `ai-howto` lists install-editor, install-skill, install-extension, run-command steps. +- `ai-links` cross-links the skill repo and the page's installation guide. + +## How to get to it (user POV) + +- Scroll to `Generate protocols with AI, verify with Protocol Visualizer` on `/` (between the features grid and the screenshot). +- Choose the `protocol-fix-loop` link to open `https://github.com/koji/protocol-fix-loop` in a new tab. +- Choose the `Installation guide` link in step 3 to jump to `#install`. + +## Driving it with drive.mjs + +Preconditions: + +- Doctor reports `"ok": true` at the run URL. +- Fresh page load; no prior interaction. + +- **Region.** Find the section. Run `bun .opencode/skills/verify-web/scripts/drive.mjs --url http://127.0.0.1:5173/ --feature ai-workflow --out `. A `section#ai-workflow` with accessible name `Generate protocols with AI` exists. +- **Heading.** Read the section heading. The run asserts it contains `Generate protocols with AI`. +- **Video.** Inspect the player. The run asserts a `video` whose `src` is exactly `https://github.com/user-attachments/assets/812fbcdf-a84a-49fd-b631-ae925b64dddf` with `controls`. +- **Commands.** Read the steps. The run asserts the text contains `npx skills add koji/protocol-fix-loop` and `/protocol-fix-loop`. +- **Links.** Follow the references. The run asserts at least one link to `https://github.com/koji/protocol-fix-loop` and one link to `#install`. +- **Proof.** Inspect the artifacts. `/screenshot.png` shows the video and steps, `/dom.html` contains both commands, `/result.json` records all seven checks passing. + +## Gotchas + +- The video is remote media; the file asserts the `src` attribute and `controls`, it does not play the stream. A missing network still passes as long as the markup is correct. +- `/protocol-fix-loop` is a substring of the install command context too. The steps list must contain both the `npx skills add ...` line and the standalone chat command. +- External repo links open in a new tab (`target="_blank"`). The drive does not follow them; it asserts `href` values only. diff --git a/.opencode/skills/verify-web/features/features-grid.md b/.opencode/skills/verify-web/features/features-grid.md new file mode 100644 index 0000000..c786f18 --- /dev/null +++ b/.opencode/skills/verify-web/features/features-grid.md @@ -0,0 +1,31 @@ +# Features grid + +Features grid lists the six capability cards under the heading `Everything you need to see your protocol run`, each with a title and a one-paragraph description. + +## Sub-features + +- `features-heading` names the section's promise. +- `features-cards` renders all six cards with titles and descriptions. + +## How to get to it (user POV) + +- Scroll to `Everything you need to see your protocol run` on `/`. +- Choose `Features` in the header section navigation (jumps to `#features`). + +## Driving it with drive.mjs + +Preconditions: + +- Doctor reports `"ok": true` at the run URL. +- Fresh page load; no prior interaction. + +- **Region.** Find the section. Run `bun .opencode/skills/verify-web/scripts/drive.mjs --url http://127.0.0.1:5173/ --feature features-grid --out `. A `section#features` with accessible name `Features` exists. +- **Heading.** Read the section heading. The run asserts it equals `Everything you need to see your protocol run`. +- **Cards.** Count and name the cards. The run asserts exactly 6 `article` elements whose `h3` titles are `Real-time Deck Visualization`, `Auto-analysis on Save`, `Runtime Parameters UI`, `Custom Labware Support`, `Pop-out Window`, and `Step Jumper`. +- **Proof.** Inspect the artifacts. `/screenshot.png` shows the grid, `/axtree.json` exposes the six headings, `/result.json` records all three checks passing. + +## Gotchas + +- The grid collapses to 2 columns under 1024px and 1 column under 768px. Card count stays 6; assert count, not layout. +- Card hover lifts the card (`translateY`). Screenshots may differ on hover; capture without hovering. +- Titles are exact strings. `Runtime Parameters UI` and `Step Jumper` are easy to mistype — copy them verbatim. diff --git a/.opencode/skills/verify-web/features/hero.md b/.opencode/skills/verify-web/features/hero.md new file mode 100644 index 0000000..185b250 --- /dev/null +++ b/.opencode/skills/verify-web/features/hero.md @@ -0,0 +1,35 @@ +# Hero + +Hero is the first screen: the `Protocol Visualizer` headline with `Preview` badge, the Opentrons tagline, `Request access` buttons, and a link down to the installation guide. + +## Sub-features + +- `hero-headline` shows the product name and status badge. +- `hero-tagline` states the Opentrons simulation value proposition. +- `hero-request-access` offers the access form link in hero, header, and try-CTA band. +- `hero-install-link` jumps to the installation guide. + +## How to get to it (user POV) + +- Load `/` and look at the top of the page. +- Choose the `Request access` link in the hero copy, the header, or the `Want to try the extension?` band. +- Choose the `Installation guide ↓` link under the tagline. + +## Driving it with drive.mjs + +Preconditions: + +- Doctor reports `"ok": true` at the run URL. +- Fresh page load; no prior interaction. + +- **Headline.** Load the page. Run `bun .opencode/skills/verify-web/scripts/drive.mjs --url http://127.0.0.1:5173/ --feature hero --out `. The `h1` reads `Protocol Visualizer`. +- **Tagline.** Read the hero paragraph. The same run asserts it contains `Simulate your Opentrons`. +- **Request access.** Count the access links. The run asserts at least 3 links named `Request access` and every one targets `docs.google.com/forms`. +- **Install jump.** Follow `Installation guide ↓`. The run asserts one of the `#install` links (header nav also uses that href) reads `Installation guide`. +- **Proof.** Inspect the artifacts. `/screenshot.png` shows the headline and CTAs, `/dom.html` contains the tagline, `/result.json` records all four checks passing. + +## Gotchas + +- `Request access` appears 3+ times (header compact, hero, try-CTA). Asserting exactly one will fail; assert at least 3 with identical form hrefs. +- The install link text includes a `↓` arrow. Match by `href="#install"`, not exact text. +- The hero beaker visual is `aria-hidden`. Do not assert on it; it is decorative. diff --git a/.opencode/skills/verify-web/features/install-guide.md b/.opencode/skills/verify-web/features/install-guide.md new file mode 100644 index 0000000..7b540c0 --- /dev/null +++ b/.opencode/skills/verify-web/features/install-guide.md @@ -0,0 +1,36 @@ +# Install guide + +Install guide documents prerequisites (Python, `opentrons` package, OT-2 pin, interpreter selection) and the two extension install methods (Command Palette, `code --install-extension`). The header section navigation jumps to it and to the features grid. + +## Sub-features + +- `install-prereqs` lists the Python/opentrons prerequisites. +- `install-cli-method` shows the `code --install-extension` command. +- `header-nav` links `Features` and `Install` to their anchors. +- `anchor-navigation` scrolls to the install section on nav click. + +## How to get to it (user POV) + +- Scroll to `Installation` on `/`. +- Choose `Install` in the header section navigation (jumps to `#install`). +- Choose `Installation guide ↓` in the hero or `Installation guide` in the AI workflow steps. + +## Driving it with drive.mjs + +Preconditions: + +- Doctor reports `"ok": true` at the run URL. +- Fresh page load; no prior interaction. + +- **Region.** Find the section. Run `bun .opencode/skills/verify-web/scripts/drive.mjs --url http://127.0.0.1:5173/ --feature install-guide --out `. A `section#install` with accessible name `Installation guide` exists. +- **Prerequisites.** Read the block. The run asserts the text contains `Python 3.8 or later`, `pip install opentrons`, and `Python: Select Interpreter`. +- **CLI method.** Read the second method. The run asserts the text contains `code --install-extension protocol-visualizer.vsix`. +- **Nav links.** Inspect the header. The run asserts `Section navigation` contains `Features` → `#features` and `Install` → `#install`. +- **Anchor jump.** Choose `Install` in the header nav. The run clicks it and asserts `location.hash` becomes `#install` with the install section inside the viewport. +- **Proof.** Inspect the artifacts. `/screenshot.png` shows the page after the anchor jump, `/dom.html` contains the prerequisite texts, `/result.json` records all five checks passing. + +## Gotchas + +- Anchor navigation is the only in-page routing; there is no router and no other URL. Do not expect `/install` to exist. +- The OT-2 note pins `opentrons==9.0.0`. Asserting bare `pip install opentrons` as an exact string fails — the recipe asserts containment, not equality. +- The anchor click changes `location.hash` in the driven page only. Later recipes start from a fresh load, so no cleanup is needed. diff --git a/.opencode/skills/verify-web/features/theme-toggle.md b/.opencode/skills/verify-web/features/theme-toggle.md new file mode 100644 index 0000000..35f6218 --- /dev/null +++ b/.opencode/skills/verify-web/features/theme-toggle.md @@ -0,0 +1,32 @@ +# Theme toggle + +Theme toggle flips the site between dark and light themes from the header button and persists the choice in `localStorage`, so a reload keeps the selected theme. + +## Sub-features + +- `toggle-present` exposes a header button named `Switch to light theme` or `Switch to dark theme`. +- `toggle-flips-theme` changes `documentElement` theme and persists it. +- `toggle-restores` flips back, leaving the page as found. + +## How to get to it (user POV) + +- Choose the sun/moon button in the header (right side, next to `Request access`). + +## Driving it with drive.mjs + +Preconditions: + +- Doctor reports `"ok": true` at the run URL. +- Fresh Chromium profile, so `localStorage` starts empty. + +- **Presence.** Find the button. Run `bun .opencode/skills/verify-web/scripts/drive.mjs --url http://127.0.0.1:5173/ --feature theme-toggle --out `. A `button` whose accessible name starts with `Switch to` exists. +- **Flip.** Choose the toggle. The run clicks once, waits for React to flush the state update, and asserts `documentElement.dataset.theme` changed, is `dark` or `light`, and `localStorage.theme` equals the new value. +- **Restore.** Choose the toggle again. The run clicks a second time, waits, and asserts the theme flipped back (differs from the post-flip value), the persisted value matches, and the button label names the opposite theme — leaving the page as found. +- **Proof.** Inspect the artifacts. `/result.json` records the before/after/stored triple for the flip, `/screenshot.png` shows the restored page. + +## Gotchas + +- The toggle goes through React state, so the theme attribute updates asynchronously after the click. The drive waits ~400ms before reading; a synchronous read sees the stale theme and fails. +- The initial theme follows `prefers-color-scheme` (headless Chromium default), so never assert a specific starting theme — assert the flip and persistence instead. +- The button icon swaps (sun in dark mode, moon in light mode) but both are `aria-hidden` SVGs. Assert the button's accessible name, not the icon. +- `localStorage` persists per Chromium profile. Drives always use a fresh profile, so a stored value in `result.json` came from the clicks in that run. diff --git a/.opencode/skills/verify-web/scripts/doctor.mjs b/.opencode/skills/verify-web/scripts/doctor.mjs new file mode 100644 index 0000000..01d0cd8 --- /dev/null +++ b/.opencode/skills/verify-web/scripts/doctor.mjs @@ -0,0 +1,52 @@ +#!/usr/bin/env bun +// doctor.mjs — read-only health check for a running verification instance. +// Answers: "is this instance worth driving?" +// +// Usage: +// bun scripts/doctor.mjs --url http://127.0.0.1:5173 +// +// Exits 0 when healthy, 1 otherwise. Never starts, stops, or mutates anything. + +function parseArgs(argv) { + const out = {} + for (let i = 0; i < argv.length; i++) { + if (argv[i].startsWith('--')) { + const key = argv[i].slice(2) + const next = argv[i + 1] + out[key] = next && !next.startsWith('--') ? argv[++i] : 'true' + } + } + return out +} + +const args = parseArgs(process.argv.slice(2)) +const url = args.url ?? 'http://127.0.0.1:5173/' + +try { + const controller = new AbortController() + const timer = setTimeout(() => controller.abort(), 8000) + const res = await fetch(url, { signal: controller.signal }) + clearTimeout(timer) + const body = await res.text() + const hasRoot = body.includes('
') + const isDev = body.includes('/src/main.tsx') + const isBuild = body.includes('/assets/') + const report = { + ok: res.ok && hasRoot && (isDev || isBuild), + url, + status: res.status, + hasRoot, + mode: isDev ? 'dev' : isBuild ? 'preview/build' : 'unknown', + } + console.log(JSON.stringify(report, null, 1)) + if (!report.ok) { + console.error( + 'doctor: instance is NOT worth driving (expected HTTP 200 +
+ vite client or built assets).', + ) + process.exit(1) + } + console.log('doctor: instance is healthy.') +} catch (e) { + console.error(`doctor: unreachable at ${url} — ${e?.message ?? e}`) + process.exit(1) +} diff --git a/.opencode/skills/verify-web/scripts/drive.mjs b/.opencode/skills/verify-web/scripts/drive.mjs new file mode 100644 index 0000000..25d3c8a --- /dev/null +++ b/.opencode/skills/verify-web/scripts/drive.mjs @@ -0,0 +1,541 @@ +#!/usr/bin/env bun +// drive.mjs — drive the real protocol-visualizer-web landing page in headless +// Chromium over CDP (no npm dependencies; uses bun built-ins only). +// +// Usage: +// bun scripts/drive.mjs --url http://127.0.0.1:5173 --feature --out +// [--chrome ] [--cdp-port 19222] +// +// Exits 0 when every check passes, 1 otherwise. Always writes per-feature +// artifacts (screenshot.png, dom.html, axtree.json, result.json) into --out +// (or --out/ when --feature all). + +import fs from 'node:fs' +import os from 'node:os' +import path from 'node:path' + +const FEATURES = [ + 'hero', + 'features-grid', + 'ai-workflow', + 'theme-toggle', + 'install-guide', +] + +const EXPECTED_FEATURE_TITLES = [ + 'Real-time Deck Visualization', + 'Auto-analysis on Save', + 'Runtime Parameters UI', + 'Custom Labware Support', + 'Pop-out Window', + 'Step Jumper', +] + +const AI_VIDEO = + 'https://github.com/user-attachments/assets/812fbcdf-a84a-49fd-b631-ae925b64dddf' +const SKILL_REPO = 'https://github.com/koji/protocol-fix-loop' + +function parseArgs(argv) { + const out = {} + for (let i = 0; i < argv.length; i++) { + if (argv[i].startsWith('--')) { + const key = argv[i].slice(2) + const next = argv[i + 1] + out[key] = next && !next.startsWith('--') ? argv[++i] : 'true' + } + } + return out +} + +// Kill a spawned process AND its children. `bun x ` wraps the real +// server in a child process, so a bare kill() can orphan the listener. +function killTree(proc) { + try { + if (process.platform === 'win32') { + Bun.spawnSync(['taskkill', '/PID', String(proc.pid), '/T', '/F'], { + stdout: 'ignore', + stderr: 'ignore', + }) + } else { + proc.kill() + } + } catch {} +} + +function findChrome(explicit) { + const candidates = [ + explicit, + process.env.CHROME_PATH, + `${process.env.LOCALAPPDATA}\\ms-playwright\\chromium-1208\\chrome-win64\\chrome.exe`, + 'C:\\Program Files\\Google\\Chrome\\Application\\chrome.exe', + 'C:\\Program Files (x86)\\Google\\Chrome\\Application\\chrome.exe', + 'C:\\Program Files\\Microsoft\\Edge\\Application\\msedge.exe', + ].filter(Boolean) + for (const c of candidates) { + try { + if (fs.existsSync(c)) return c + } catch {} + } + return null +} + +async function sleep(ms) { + return new Promise((r) => setTimeout(r, ms)) +} + +function createCdp(ws) { + let nextId = 1 + const pending = new Map() + const waiters = new Map() // method name -> [resolve] + ws.onmessage = (event) => { + let msg + try { + msg = JSON.parse(String(event.data)) + } catch { + return + } + if (msg.id !== undefined && pending.has(msg.id)) { + const { resolve, reject } = pending.get(msg.id) + pending.delete(msg.id) + if (msg.error) + reject(new Error(`CDP error: ${JSON.stringify(msg.error)}`)) + else resolve(msg.result) + } else if (msg.method) { + const list = waiters.get(msg.method) + if (list) { + waiters.delete(msg.method) + for (const r of list) r(msg.params) + } + } + } + function send(method, params = {}, timeoutMs = 20000) { + const id = nextId++ + return new Promise((resolve, reject) => { + pending.set(id, { resolve, reject }) + ws.send(JSON.stringify({ id, method, params })) + setTimeout(() => { + if (pending.has(id)) { + pending.delete(id) + reject(new Error(`CDP timeout: ${method}`)) + } + }, timeoutMs) + }) + } + function waitForEvent(method, timeoutMs = 20000) { + return new Promise((resolve, reject) => { + if (!waiters.has(method)) waiters.set(method, []) + waiters.get(method).push(resolve) + setTimeout(() => { + const list = waiters.get(method) ?? [] + const idx = list.indexOf(resolve) + if (idx >= 0) { + list.splice(idx, 1) + reject(new Error(`CDP event timeout: ${method}`)) + } + }, timeoutMs) + }) + } + return { send, waitForEvent } +} + +async function evaluate(cdp, expression) { + const res = await cdp.send('Runtime.evaluate', { + expression, + returnByValue: true, + awaitPromise: true, + }) + if (res.exceptionDetails) { + throw new Error( + `evaluate threw: ${JSON.stringify(res.exceptionDetails).slice(0, 500)}`, + ) + } + return res.result?.value +} + +async function waitForReady(cdp, timeoutMs = 20000) { + const start = Date.now() + while (Date.now() - start < timeoutMs) { + const h1 = await evaluate( + cdp, + `document.querySelector('#root h1')?.textContent ?? null`, + ) + if (h1) return h1 + await sleep(250) + } + throw new Error('timed out waiting for #root h1 to render') +} + +// Each check returns { id, pass, detail }. Expressions run in the page. +const CHECKS = { + hero: [ + { + id: 'hero-headline', + expr: `document.querySelector('#root h1')?.textContent ?? null`, + want: 'Protocol Visualizer', + }, + { + id: 'hero-tagline', + expr: `document.querySelector('#root section p')?.textContent ?? null`, + contains: 'Simulate your Opentrons', + }, + { + id: 'hero-request-access-links', + expr: `(() => { const a = [...document.querySelectorAll('#root a')].filter(e => e.textContent.trim() === 'Request access'); return { count: a.length, hrefs: a.map(e => e.href) }; })()`, + check: (v) => + v.count >= 3 && + v.hrefs.every((h) => h.includes('docs.google.com/forms')), + }, + { + id: 'hero-install-link', + expr: `[...document.querySelectorAll('#root a[href="#install"]')].map(a => a.textContent.trim())`, + check: (v) => + Array.isArray(v) && v.some((t) => t.includes('Installation guide')), + }, + ], + 'features-grid': [ + { + id: 'features-region', + expr: `document.querySelector('section#features[aria-label="Features"]') !== null`, + want: true, + }, + { + id: 'features-heading', + expr: `document.querySelector('section#features h2')?.textContent ?? null`, + want: 'Everything you need to see your protocol run', + }, + { + id: 'features-cards', + expr: `[...document.querySelectorAll('section#features article')].map(a => a.querySelector('h3')?.textContent ?? '')`, + check: (v) => + Array.isArray(v) && + v.length === 6 && + EXPECTED_FEATURE_TITLES.every((t) => v.includes(t)), + }, + ], + 'ai-workflow': [ + { + id: 'ai-region', + expr: `document.querySelector('section#ai-workflow[aria-label="Generate protocols with AI"]') !== null`, + want: true, + }, + { + id: 'ai-heading', + expr: `document.querySelector('section#ai-workflow h2')?.textContent ?? null`, + contains: 'Generate protocols with AI', + }, + { + id: 'ai-video', + expr: `(() => { const v = document.querySelector('section#ai-workflow video'); return v ? { src: v.getAttribute('src'), controls: v.hasAttribute('controls') } : null; })()`, + check: (v) => v !== null && v.src === AI_VIDEO && v.controls === true, + }, + { + id: 'ai-skill-command', + expr: `document.querySelector('section#ai-workflow')?.textContent.includes('npx skills add koji/protocol-fix-loop') ?? false`, + want: true, + }, + { + id: 'ai-slash-command', + expr: `document.querySelector('section#ai-workflow')?.textContent.includes('/protocol-fix-loop') ?? false`, + want: true, + }, + { + id: 'ai-skill-links', + expr: `[...document.querySelectorAll('section#ai-workflow a[href="${SKILL_REPO}"]')].length`, + check: (v) => typeof v === 'number' && v >= 1, + }, + { + id: 'ai-install-link', + expr: `document.querySelector('section#ai-workflow a[href="#install"]') !== null`, + want: true, + }, + ], + 'theme-toggle': [ + { + id: 'toggle-present', + expr: `document.querySelector('button[aria-label^="Switch to"]')?.getAttribute('aria-label') ?? null`, + check: (v) => + v === 'Switch to light theme' || v === 'Switch to dark theme', + }, + { + id: 'toggle-flips-theme', + expr: `(async () => { const b = document.querySelector('button[aria-label^="Switch to"]'); if (!b) return null; const before = document.documentElement.dataset.theme; b.click(); await new Promise(r => setTimeout(r, 400)); const after = document.documentElement.dataset.theme; const stored = localStorage.getItem('theme'); window.__verifyThemeFlipped = after; return { before, after, stored }; })()`, + check: (v) => + v !== null && + v.before !== v.after && + (v.after === 'dark' || v.after === 'light') && + v.stored === v.after, + }, + { + id: 'toggle-restores', + expr: `(async () => { const b = document.querySelector('button[aria-label^="Switch to"]'); if (!b) return null; b.click(); await new Promise(r => setTimeout(r, 400)); return { theme: document.documentElement.dataset.theme, stored: localStorage.getItem('theme'), label: b.getAttribute('aria-label'), flipped: window.__verifyThemeFlipped ?? null }; })()`, + check: (v) => + v !== null && + (v.theme === 'dark' || v.theme === 'light') && + v.stored === v.theme && + v.theme !== v.flipped && + v.label === + (v.theme === 'dark' + ? 'Switch to light theme' + : 'Switch to dark theme'), + }, + ], + 'install-guide': [ + { + id: 'install-region', + expr: `document.querySelector('section#install[aria-label="Installation guide"]') !== null`, + want: true, + }, + { + id: 'install-prereqs', + expr: `document.querySelector('section#install')?.textContent ?? ''`, + check: (v) => + typeof v === 'string' && + v.includes('Python 3.8 or later') && + v.includes('pip install opentrons') && + v.includes('Python: Select Interpreter'), + }, + { + id: 'install-cli-method', + expr: `document.querySelector('section#install')?.textContent.includes('code --install-extension protocol-visualizer.vsix') ?? false`, + want: true, + }, + { + id: 'header-nav', + expr: `[...document.querySelectorAll('header nav[aria-label="Section navigation"] a')].map(a => [a.textContent.trim(), a.getAttribute('href')])`, + check: (v) => + Array.isArray(v) && + v.some(([t, h]) => t === 'Features' && h === '#features') && + v.some(([t, h]) => t === 'Install' && h === '#install'), + }, + { + id: 'anchor-navigation', + expr: `(() => { const link = document.querySelector('header nav a[href="#install"]'); if (!link) return null; link.click(); const sec = document.querySelector('section#install'); const r = sec.getBoundingClientRect(); return { hash: location.hash, top: Math.round(r.top), vh: window.innerHeight }; })()`, + check: (v) => v !== null && v.hash === '#install' && v.top < v.vh, + }, + ], +} + +function judge(check, value) { + if (check.check) { + try { + return check.check(value) === true + } catch { + return false + } + } + if (check.want !== undefined) + return JSON.stringify(value) === JSON.stringify(check.want) + if (check.contains !== undefined) + return typeof value === 'string' && value.includes(check.contains) + return false +} + +async function driveFeature(cdp, pageUrl, feature, outDir) { + fs.mkdirSync(outDir, { recursive: true }) + + await cdp.send('Page.navigate', { url: pageUrl }) + await cdp.waitForEvent('Page.loadEventFired').catch(() => {}) + await waitForReady(cdp) + // Let entrance animations (e.g. hero 0.6s fade-in) finish so the + // screenshot shows the steady visual state. + await sleep(900) + + const results = [] + for (const check of CHECKS[feature]) { + let value = null + let pass = false + let error = null + try { + value = await evaluate(cdp, check.expr) + pass = judge(check, value) + } catch (e) { + error = String(e).slice(0, 300) + } + results.push({ id: check.id, pass, value, error }) + console.log( + ` [${pass ? 'PASS' : 'FAIL'}] ${check.id}${pass ? '' : ` — saw ${JSON.stringify(value)?.slice(0, 200)}${error ? ` (${error})` : ''}`}`, + ) + } + + const shot = await (async () => { + // Show the driven feature in the screenshot, not just the page top. + const targets = { + hero: null, // top of page + 'features-grid': 'section#features', + 'ai-workflow': 'section#ai-workflow', + 'theme-toggle': null, // header, at top of page + 'install-guide': 'section#install', + } + const sel = targets[feature] + if (sel) { + await evaluate( + cdp, + `document.querySelector(${JSON.stringify(sel)})?.scrollIntoView({ block: 'start' }); window.scrollBy(0, -72)`, + ) + } else { + await evaluate(cdp, `window.scrollTo(0, 0)`) + } + await sleep(500) + return cdp.send('Page.captureScreenshot', { format: 'png' }) + })() + fs.writeFileSync( + path.join(outDir, 'screenshot.png'), + Buffer.from(shot.data, 'base64'), + ) + const dom = await evaluate(cdp, `document.documentElement.outerHTML`) + fs.writeFileSync(path.join(outDir, 'dom.html'), String(dom ?? '')) + let ax = null + try { + await cdp.send('Accessibility.enable', {}).catch(() => {}) + const tree = await cdp.send('Accessibility.getFullAXTree', {}) + ax = tree.nodes + fs.writeFileSync( + path.join(outDir, 'axtree.json'), + JSON.stringify(ax, null, 1), + ) + } catch (e) { + fs.writeFileSync( + path.join(outDir, 'axtree.json'), + JSON.stringify({ error: String(e).slice(0, 300) }), + ) + } + const passed = results.filter((r) => r.pass).length + const result = { + feature, + url: pageUrl, + passed, + total: results.length, + ok: passed === results.length, + checks: results, + finishedAt: new Date().toISOString(), + } + fs.writeFileSync( + path.join(outDir, 'result.json'), + JSON.stringify(result, null, 1), + ) + return result +} + +async function main() { + const args = parseArgs(process.argv.slice(2)) + const pageUrl = args.url ?? 'http://127.0.0.1:5173/' + const featureArg = args.feature ?? 'all' + const outBase = args.out ?? 'artifacts' + const cdpPort = Number( + args['cdp-port'] ?? process.env.VERIFY_CDP_PORT ?? 19222, + ) + const features = featureArg === 'all' ? FEATURES : [featureArg] + for (const f of features) { + if (!CHECKS[f]) { + console.error(`unknown feature: ${f} (known: ${FEATURES.join(', ')})`) + process.exit(2) + } + } + + const chrome = findChrome(args.chrome) + if (!chrome) { + console.error( + 'no Chromium/Chrome binary found. Set CHROME_PATH or install Chrome.', + ) + process.exit(2) + } + console.log(`chrome: ${chrome}`) + + const profile = fs.mkdtempSync(path.join(os.tmpdir(), 'verify-web-profile-')) + const proc = Bun.spawn( + [ + chrome, + '--headless=new', + '--no-sandbox', + '--disable-gpu', + '--hide-scrollbars', + '--window-size=1280,900', + '--force-device-scale-factor=1', + '--no-first-run', + '--no-default-browser-check', + `--user-data-dir=${profile}`, + `--remote-debugging-port=${cdpPort}`, + 'about:blank', + ], + { stdout: 'ignore', stderr: 'ignore' }, + ) + + const cleanup = () => { + killTree(proc) + try { + fs.rmSync(profile, { recursive: true, force: true }) + } catch {} + } + process.on('SIGINT', () => { + cleanup() + process.exit(130) + }) + + try { + let targets = null + const start = Date.now() + while (Date.now() - start < 15000) { + try { + const res = await fetch(`http://127.0.0.1:${cdpPort}/json/list`) + const list = await res.json() + const page = list.find( + (t) => t.type === 'page' && t.webSocketDebuggerUrl, + ) + if (page) { + targets = page + break + } + } catch {} + await sleep(250) + } + if (!targets) + throw new Error('timed out waiting for Chrome remote debugging') + + const ws = new WebSocket(targets.webSocketDebuggerUrl) + await new Promise((resolve, reject) => { + const t = setTimeout( + () => reject(new Error('websocket connect timeout')), + 10000, + ) + ws.onopen = () => { + clearTimeout(t) + resolve() + } + ws.onerror = (e) => { + clearTimeout(t) + reject(new Error(`websocket error: ${e?.message ?? 'unknown'}`)) + } + }) + const cdp = createCdp(ws) + await cdp.send('Page.enable', {}) + await cdp.send('Runtime.enable', {}) + + // Doctor-style precheck: the app must serve its shell before driving. + const probe = await fetch(pageUrl) + if (!probe.ok) + throw new Error(`app probe failed: HTTP ${probe.status} at ${pageUrl}`) + + let allOk = true + for (const f of features) { + const outDir = featureArg === 'all' ? path.join(outBase, f) : outBase + console.log(`feature: ${f}`) + const result = await driveFeature(cdp, pageUrl, f, outDir) + console.log( + ` -> ${result.passed}/${result.total} passed — ${path.join(outDir, 'screenshot.png')}`, + ) + if (!result.ok) allOk = false + } + ws.close() + try { + await cdp.send('Browser.close', {}).catch(() => {}) + } catch {} + cleanup() + process.exit(allOk ? 0 : 1) + } catch (e) { + console.error(`drive failed: ${e?.message ?? e}`) + cleanup() + process.exit(1) + } +} + +await main() diff --git a/.opencode/skills/verify-web/scripts/verify.mjs b/.opencode/skills/verify-web/scripts/verify.mjs new file mode 100644 index 0000000..f264f64 --- /dev/null +++ b/.opencode/skills/verify-web/scripts/verify.mjs @@ -0,0 +1,186 @@ +#!/usr/bin/env bun +// verify.mjs — one-shot end-to-end verification for protocol-visualizer-web. +// Spawns its own `vite` server as a child process (same process tree, so no +// cross-shell lifetime issues), runs doctor, drives the requested features in +// real Chromium, then always tears the server down. Proof artifacts survive. +// +// Usage (run from the repo root): +// bun .opencode/skills/verify-web/scripts/verify.mjs --feature [--port 5173] [--run-id ] +// +// Env overrides: VERIFY_PORT, VERIFY_CDP_PORT, VERIFY_RUN_ID, CHROME_PATH. + +import fs from 'node:fs' +import path from 'node:path' +import { fileURLToPath } from 'node:url' + +const SKILL_DIR = path.dirname(path.dirname(fileURLToPath(import.meta.url))) +const ROOT = path.dirname(path.dirname(path.dirname(SKILL_DIR))) + +function parseArgs(argv) { + const out = {} + for (let i = 0; i < argv.length; i++) { + if (argv[i].startsWith('--')) { + const key = argv[i].slice(2) + const next = argv[i + 1] + out[key] = next && !next.startsWith('--') ? argv[++i] : 'true' + } + } + return out +} + +async function sleep(ms) { + return new Promise((r) => setTimeout(r, ms)) +} + +// Kill a spawned process AND its children. `bun x ` wraps the real +// server in a child process, so a bare kill() can orphan the listener. +function killTree(proc) { + try { + if (process.platform === 'win32') { + Bun.spawnSync(['taskkill', '/PID', String(proc.pid), '/T', '/F'], { + stdout: 'ignore', + stderr: 'ignore', + }) + } else { + proc.kill() + } + } catch {} +} + +const args = parseArgs(process.argv.slice(2)) +const feature = args.feature ?? 'all' +const port = Number(args.port ?? process.env.VERIFY_PORT ?? 5173) +const runId = + args['run-id'] ?? + process.env.VERIFY_RUN_ID ?? + new Date().toISOString().replace(/[:.]/g, '-') +const artifacts = path.join(SKILL_DIR, 'artifacts', runId) +const serverLog = path.join(artifacts, 'vite-server.log') + +fs.mkdirSync(artifacts, { recursive: true }) +const url = `http://127.0.0.1:${port}/` + +console.log(`launch: bun x vite --host 127.0.0.1 --port ${port} --strictPort`) +const server = Bun.spawn( + [ + process.execPath, + 'x', + 'vite', + '--host', + '127.0.0.1', + '--port', + String(port), + '--strictPort', + ], + { + cwd: ROOT, + stdout: 'pipe', + stderr: 'pipe', + }, +) +const logFile = fs.createWriteStream(serverLog) +server.stdout.pipeTo(new WritableStream({ write: (c) => logFile.write(c) })) +server.stderr.pipeTo(new WritableStream({ write: (c) => logFile.write(c) })) + +let exitCode = 1 +try { + // Wait for readiness: log line + HTTP 200. + let ready = false + const start = Date.now() + while (Date.now() - start < 30000) { + if (server.exitCode !== null && server.exitCode !== undefined) { + throw new Error( + `vite exited early (code ${server.exitCode}); see ${serverLog}`, + ) + } + try { + const res = await fetch(url) + if (res.ok) { + ready = true + break + } + } catch {} + await sleep(300) + } + if (!ready) + throw new Error(`vite never became ready at ${url}; see ${serverLog}`) + console.log(`launch: ready at ${url}`) + + // Doctor (official read-only check, as a separate step). + console.log('doctor:') + const doctor = Bun.spawn( + ['bun', path.join(SKILL_DIR, 'scripts', 'doctor.mjs'), '--url', url], + { + cwd: ROOT, + stdout: 'inherit', + stderr: 'inherit', + }, + ) + const doctorCode = await doctor.exited + if (doctorCode !== 0) + throw new Error('doctor reported the instance is not worth driving') + + // Drive. + console.log('drive:') + const drive = Bun.spawn( + [ + 'bun', + path.join(SKILL_DIR, 'scripts', 'drive.mjs'), + '--url', + url, + '--feature', + feature, + '--out', + artifacts, + ], + { cwd: ROOT, stdout: 'inherit', stderr: 'inherit' }, + ) + const driveCode = await drive.exited + exitCode = driveCode + + // Cleanup never eats the proof: confirm artifacts still exist after teardown. + const walked = [] + const walk = (dir) => { + for (const e of fs.readdirSync(dir, { withFileTypes: true })) { + const p = path.join(dir, e.name) + if (e.isDirectory()) walk(p) + else walked.push(p) + } + } + walk(artifacts) + const hasShot = walked.some((p) => p.endsWith('screenshot.png')) + const hasResult = walked.some((p) => p.endsWith('result.json')) + console.log(`artifacts: ${artifacts} (${walked.length} files)`) + if (!hasShot || !hasResult) + throw new Error( + 'evidence missing after run (screenshot.png + result.json required)', + ) +} catch (e) { + console.error(`verify failed: ${e?.message ?? e}`) + exitCode = 1 +} finally { + killTree(server) + await server.exited.catch(() => {}) + try { + logFile.end() + } catch {} + // Prove the teardown: the port must refuse connections afterwards. + let portFree = false + for (let i = 0; i < 20; i++) { + try { + await fetch(url) + await sleep(250) + } catch { + portFree = true + break + } + } + console.log( + `cleanup: vite server stopped (port free: ${portFree}; artifacts retained).`, + ) + if (!portFree) { + console.error(`cleanup: port ${port} is still owned after teardown`) + exitCode = 1 + } +} +process.exit(exitCode) diff --git a/docs/verification.md b/docs/verification.md new file mode 100644 index 0000000..0b8e195 --- /dev/null +++ b/docs/verification.md @@ -0,0 +1,74 @@ +# Verification + +This repo ships a scripted way to drive the real landing page and prove its behavior: the `verify-web` skill in `.opencode/skills/verify-web/`. It serves the site with `vite`, opens it in real headless Chromium over CDP, asserts DOM/accessibility state, and captures screenshots. No mocks, no test-only endpoints, no npm dependencies (bun built-ins only). + +## Prerequisites + +- `bun` on PATH. +- A Chromium/Chrome binary. Auto-detected in this order: `CHROME_PATH` env, Playwright-cached `chromium-1208`, system Chrome, Edge. Override with `CHROME_PATH` or `--chrome`. +- Ports free: app port (default `5173`) and CDP port (default `19222`). + +## Quick start + +Run from the repo root: + +```powershell +bun .opencode/skills/verify-web/scripts/verify.mjs --feature all +``` + +This spawns its own `vite` server, runs the doctor check, drives every mapped feature, tears the server down, and leaves proof under `.opencode/skills/verify-web/artifacts//`. Exit 0 only if every check passes. + +Verify a single feature: + +```powershell +bun .opencode/skills/verify-web/scripts/verify.mjs --feature ai-workflow --port 5173 +``` + +Feature IDs: `hero`, `features-grid`, `ai-workflow`, `theme-toggle`, `install-guide`. Recipes live in `.opencode/skills/verify-web/features/`. + +## Individual steps + +Health-check a running instance (read-only, never starts or stops anything): + +```powershell +bun .opencode/skills/verify-web/scripts/doctor.mjs --url http://127.0.0.1:5173/ +``` + +Drive an already-running instance and write evidence to ``: + +```powershell +bun .opencode/skills/verify-web/scripts/drive.mjs --url http://127.0.0.1:5173/ --feature --out +``` + +Manual server launch (only for interactive debugging — background processes do not survive across separate shell sessions, so prefer `verify.mjs`): + +```powershell +$p = Start-Process bun -ArgumentList @('x','vite','--host','127.0.0.1','--port','5173','--strictPort') -PassThru +bun .opencode/skills/verify-web/scripts/doctor.mjs --url http://127.0.0.1:5173/ +Stop-Process -Id $p.Id -Force +``` + +## Environment variables + +| Variable | Default | Purpose | +| ----------------- | ----------- | ------------------------------------------------------------------------- | +| `VERIFY_PORT` | `5173` | App server port (also `--port`) | +| `VERIFY_CDP_PORT` | `19222` | Chrome remote-debugging port (also `--cdp-port`); change per parallel run | +| `VERIFY_RUN_ID` | timestamp | Artifact directory name (also `--run-id`) | +| `CHROME_PATH` | auto-detect | Browser binary (also `--chrome` for `drive.mjs`) | + +## Evidence + +Per feature, `///` contains `screenshot.png` (rendered page showing the feature), `dom.html` (post-hydration DOM), `axtree.json` (full accessibility tree), and `result.json` (per-check pass/fail with observed values). Plus `vite-server.log` at the run root. Cleanup never deletes evidence. + +## Gotchas + +- Never drive a URL you did not start. If the port is taken, pick another `--port` instead of reusing someone's dev server. +- Each drive uses a fresh Chromium profile, so `localStorage` starts empty and the theme starts from the browser default. Never assert a specific starting theme — assert the flip and persistence. +- The demo video is asserted by `src` attribute and `controls`, not by playing the remote stream. +- The hero fades in over 0.6s; the drive waits for the steady state before capturing. +- `result.json` with a failing check names the check id and the observed value — start there when a run goes red. + +## Maintenance + +The `features/` map is the maintained verification source. When the page changes, update the matching feature file first, then the checks in `scripts/drive.mjs`. See `/maintain-verification-skill` for the periodic audit loop. diff --git a/src/App.tsx b/src/App.tsx index aaff810..36b001a 100644 --- a/src/App.tsx +++ b/src/App.tsx @@ -3,6 +3,7 @@ import { useTheme } from './hooks/useTheme' import { Header } from './components/Header/Header' import { Hero } from './components/Hero/Hero' import { Features } from './components/Features/Features' +import { AiWorkflow } from './components/AiWorkflow/AiWorkflow' import { Screenshot } from './components/Screenshot/Screenshot' import { TryCta } from './components/TryCta/TryCta' import { Install } from './components/Install/Install' @@ -19,6 +20,7 @@ export default function App(): ReactNode { + diff --git a/src/components/AiWorkflow/AiWorkflow.module.css b/src/components/AiWorkflow/AiWorkflow.module.css new file mode 100644 index 0000000..9a96f1b --- /dev/null +++ b/src/components/AiWorkflow/AiWorkflow.module.css @@ -0,0 +1,74 @@ +.section { + padding-block: 32px 88px; +} + +.heading { + margin: 0 0 16px; + font-size: clamp(1.5rem, 3vw, 2rem); + letter-spacing: -0.01em; +} + +.lead { + max-width: 72ch; + margin: 0 0 32px; + color: var(--color-text-muted); + font-size: 1rem; + line-height: 1.6; +} + +.link { + color: var(--color-accent-strong); +} + +.figure { + margin: 0 0 32px; +} + +.video { + display: block; + width: 100%; + height: auto; + border: 1px solid var(--color-border); + border-radius: 16px; + background: var(--color-surface); +} + +.caption { + margin-top: 12px; + color: var(--color-text-muted); + font-size: 0.9rem; + text-align: center; +} + +.subHeading { + margin: 0 0 12px; + font-size: 1.05rem; +} + +.steps { + max-width: 72ch; + margin: 0; + padding: 24px 24px 24px 42px; + border: 1px solid var(--color-border); + border-radius: 14px; + background: var(--color-surface); + color: var(--color-text-muted); + font-size: 0.95rem; + line-height: 1.6; +} + +.steps li + li { + margin-top: 8px; +} + +.codeInline { + padding: 2px 6px; + border-radius: 6px; + background: color-mix(in srgb, var(--color-accent) 12%, transparent); + color: var(--color-accent-strong); + font-size: 0.85em; +} + +.muted { + font-size: 0.9em; +} diff --git a/src/components/AiWorkflow/AiWorkflow.test.tsx b/src/components/AiWorkflow/AiWorkflow.test.tsx new file mode 100644 index 0000000..9594d44 --- /dev/null +++ b/src/components/AiWorkflow/AiWorkflow.test.tsx @@ -0,0 +1,39 @@ +import { render, screen } from '@testing-library/react' +import { describe, expect, it } from 'vitest' +import { AiWorkflow } from './AiWorkflow' + +describe('AiWorkflow', () => { + it('anchors at id=ai-workflow', () => { + render() + expect(screen.getByLabelText('Generate protocols with AI')).toHaveAttribute( + 'id', + 'ai-workflow', + ) + }) + + it('links to the protocol-fix-loop skill repo', () => { + render() + const links = screen.getAllByRole('link', { name: /protocol-fix-loop/i }) + expect(links.length).toBeGreaterThanOrEqual(1) + for (const link of links) { + expect(link).toHaveAttribute( + 'href', + 'https://github.com/koji/protocol-fix-loop', + ) + } + }) + + it('shows the demo video and usage steps', () => { + render() + const video = document.querySelector('video') + expect(video).not.toBeNull() + expect(video?.getAttribute('src')).toBe( + 'https://github.com/user-attachments/assets/812fbcdf-a84a-49fd-b631-ae925b64dddf', + ) + expect( + screen.getByText('npx skills add koji/protocol-fix-loop'), + ).toBeInTheDocument() + expect(screen.getByText('/protocol-fix-loop')).toBeInTheDocument() + expect(screen.getByText(/Install VSCode or Cursor/i)).toBeInTheDocument() + }) +}) diff --git a/src/components/AiWorkflow/AiWorkflow.tsx b/src/components/AiWorkflow/AiWorkflow.tsx new file mode 100644 index 0000000..98779aa --- /dev/null +++ b/src/components/AiWorkflow/AiWorkflow.tsx @@ -0,0 +1,84 @@ +import type { ReactNode } from 'react' +import styles from './AiWorkflow.module.css' + +const DEMO_VIDEO = + 'https://github.com/user-attachments/assets/812fbcdf-a84a-49fd-b631-ae925b64dddf' +const SKILL_REPO = 'https://github.com/koji/protocol-fix-loop' +const SKILL_INSTALL_COMMAND = 'npx skills add koji/protocol-fix-loop' + +export function AiWorkflow(): ReactNode { + return ( +
+
+

+ Generate protocols with AI, verify with Protocol Visualizer +

+

+ Connect Protocol Visualizer to your LLM with{' '} + + protocol-fix-loop + + . Generate Opentrons protocols with GitHub Copilot or Cursor, then + simulate and fix them in a visual feedback loop. +

+ +
+ +
+ Generate a protocol from a prompt, then fix it while watching the + simulation +
+
+ +

How to use

+
    +
  1. Install VSCode or Cursor
    2. +
  2. + Install the skill:{' '} + {SKILL_INSTALL_COMMAND}{' '} + + (see{' '} + + koji/protocol-fix-loop + + ) + +
    3. +
  3. + Install the Protocol Visualizer extension (see{' '} + + Installation guide + + ) +
    4. +
  4. + Use /protocol-fix-loop in + chat and add your prompt to generate a protocol +
    5. +
+
+
+ ) +}