Import error

[THinnerichs]

The usage of your very cool package seems to raise a lot of errors under current python versions. Due to implicit relative imports being deprecated a lot of your imports cannot find the files in the same directory. To fix this please use explicit relative imports. An example:

Executing the example from your website using Kmer:

from repDNA import util, nac, nacutil

seqs = util.get_data(open("/.../my_sequence.fa"))
kmer = nac.Kmer(k=2)
print(kmer.make_kmer_vec(seqs[0]))

raises:

ModuleNotFoundError: No module named 'nacutil'

Thus, please replace any imports like

from nacutil import make_upto_kmer_list, make_revcomp_kmer_list, make_kmer_vector

with relative imports like this:

from .nacutil import make_upto_kmer_list, make_revcomp_kmer_list, make_kmer_vector

placing a point before every imported python file within the same package.

[QingjingFei]

The usage of your very cool package seems to raise a lot of errors under current python versions. Due to implicit relative imports being deprecated a lot of your imports cannot find the files in the same directory. To fix this please use explicit relative imports. An example:

Executing the example from your website using Kmer:

from repDNA import util, nac, nacutil

seqs = util.get_data(open("/.../my_sequence.fa"))
kmer = nac.Kmer(k=2)
print(kmer.make_kmer_vec(seqs[0]))

raises:

ModuleNotFoundError: No module named 'nacutil'

Thus, please replace any imports like

from nacutil import make_upto_kmer_list, make_revcomp_kmer_list, make_kmer_vector

with relative imports like this:

from .nacutil import make_upto_kmer_list, make_revcomp_kmer_list, make_kmer_vector

placing a point before every imported python file within the same package.

Thank you! I ran into the problem you mentioned. There's import problems indeed in nearly python version(3.7).

[Wayne42]

Thank you. Fixed my issue. Please push this fix soon. Last commit was many, many years ago...