diff --git a/docs/as1/as1.0.ipynb b/docs/as1/as1.0.ipynb index e3bca20..2c8c7a6 100644 --- a/docs/as1/as1.0.ipynb +++ b/docs/as1/as1.0.ipynb @@ -49,63 +49,38 @@ "id": "iNSicUCtpk8j" }, "source": [ - "\n", "## Partner studies\n", "\n", - "The samples were contributed by partner institutions from various countries. The surname and primary institution of the lead principle investigator/s contributing samples to the study, and the sample country of origin, are detailed below. \n", + "### Wild-collected samples\n", "\n", - "Enquiries about the samples and studies may be directed in the first instance to Tristan Dennis (tristan.dennis@lstmed.ac.uk), David Weetman (david.weetman@lstmed.ac.uk) or Martin Donnelly (martin.donnelly@lstmed.ac.uk).\n", + "- [1363-VO-ET-GADISA](https://www.malariagen.net/partner_study/1363-vo-et-gadisa/) - _Anopheles stephensi_ vector surveillance in Ethiopia\n", "\n", - "### 1363-VO-ET-GADISA-VMF00316 (Ethiopia)\n", + "- [1364-VO-SD-KAFY](https://www.malariagen.net/partner_study/1364-vo-sd-kafy/) - _Anopheles stephensi_ vector surveillance in Sudan\n", "\n", - "* Endalamaw Gadisa, Armaeur Hansen Research Institute, Ethiopia.\n", + "- [1365-VO-DJ-ADBI](https://www.malariagen.net/partner_study/1365-vo-dj-abdi/) - _Anopheles stephensi_ vector surveillance in Djibouti\n", "\n", - "### 1364-VO-SD-KAFY-VMF00317 (Sudan)\n", + "- [1366-VO-YE-ALLAN](https://www.malariagen.net/partner_study/1366-vo-ye-allan/) - _Anopheles stephensi_ vector surveillance in Yemen\n", "\n", - "* Hmooda Toto Kafy, University of Khartoum, Sudan.\n", - "* Elfatih Malik, University of Khartoum, Sudan.\n", + "- [1367-VO-AF-DONNELLY](https://www.malariagen.net/partner_study/1367-vo-af-donnelly/) - _Anopheles stephensi_ vector surveillance in Afghanistan\n", "\n", - "### 1365-VO-DJ-ADBI-VMF00318 (Djibouti)\n", + "- [1368-VO-PK-DONNELLY](https://www.malariagen.net/partner_study/1368-vo-pk-donnelly/) - _Anopheles stephensi_ vector surveillance in Pakistan\n", "\n", - "* Bouh Abdi Khaireh, Association Mutualis, Djibouti.\n", + "- [1369-VO-SA-AL-NAZAWI](https://www.malariagen.net/partner_study/1369-vo-sa-al-nazawi/) - _Anopheles stephensi_ vector surveillance in Saudi Arabia\n", "\n", - "### 1366-VO-YE-ALLAN-VMF00319 (Yemen)\n", + "- [1370-VO-IR-ENAYATI](https://www.malariagen.net/partner_study/1370-vo-ir-enayati/) - _Anopheles stephensi_ vector surveillance in Iran\n", "\n", - "* Richard Allan, MENTOR Initiative, United Kingdom.\n", + "- [1386-VO-KE-OCHOMO](https://www.malariagen.net/partner_study/1386-vo-ke-ochomo/) - _Anopheles stephensi_ vector surveillance in Kenya\n", "\n", - "### 1367-VO-AF-DONNELLY-VMF00320 (Afghanistan)\n", + "- [1458-VO-ET-YEWHALAW](https://www.malariagen.net/partner_study/1458-vo-et-yewhalaw/) - _Anopheles stephensi_ vector surveillance in Ethiopia\n", "\n", - "* Martin Donnelly, Liverpool School of Tropical Medicine, United Kingdom.\n", + "- [1459-VO-SD-AHMED](https://www.malariagen.net/partner_study/1459-vo-sd-ahmed/)- _Anopheles stephensi_ vector surveillance in Sudan\n", "\n", - "### 1368-VO-PK-DONNELLY-VMF00321 (Pakistan)\n", + " \n", + "### Laboratory colonies derived from wild-collected samples\n", "\n", - "* Martin Donnelly, Liverpool School of Tropical Medicine, United Kingdom.\n", - "\n", - "### 1369-VO-SA-AL-NAZAWI-VMF00322 (Saudi Arabia)\n", - "\n", - "* Ashwaq Al-Nazawi, Jazan University, Saudi Arabia. \n", - "\n", - "### 1370-VO-IR-ENAYATI-VMF00323 (Iran)\n", - "\n", - "* Ahmadali Enayati, Mazandaran University of Medical Sciences, Iran.\n", - "\n", - "### 1385-VO-DJ-WEETMAN-VMF00338 (United Kingdom).\n", - "\n", - "* David Weetman, Liverpool School of Tropical Medicine, United Kingdom.\n", - "* N.B. These are colony mosquitoes derived from wild-collected samples in Djibouti.\n", - "\n", - "### 1386-VO-KE-OCHOMO-VMF00339 (Kenya)\n", - "\n", - "* Eric Ochomo, Kenya Medical Research Institute (KEMRI), Kenya\n", - "\n", - "### 1458-VO-ET-YEWHALAW-VMF00340 (Ethiopia)\n", - "\n", - "* Delenasaw Yewhalaw, Jimma University, Ethiopia.\n", - "\n", - "### 1459-VO-SD-AHMED-VMF00342\n", - "\n", - "* Ayman Ahmed, University of Khartoum, Sudan.\n", - " \n" + "- [1385-VO-DJ-WEETMAN](https://www.malariagen.net/partner_study/1385-vo-dj-weetman/) - _Anopheles stephensi_ vector surveillance in Djibouti\n", + " \n", + "Enquiries about the samples and studies may be directed in the first instance to Tristan Dennis (tristan.dennis@lstmed.ac.uk), David Weetman (david.weetman@lstmed.ac.uk) or Martin Donnelly (martin.donnelly@lstmed.ac.uk)." ] }, { @@ -115,9 +90,7 @@ "## Literature sample sets\n", "This release also includes data from one study openly available in the literature: \n", "\n", - "### thakare-2022\n", - "\n", - "* Previously published data from [Thakare _et al_, 2022](https://www.nature.com/articles/s41598-022-07462-3)." + "- thakare-2022 - [Thakare _et al_, 2022](https://www.nature.com/articles/s41598-022-07462-3)." ] }, {