From fe77ece00b321057eee32bdbbe211e29109e1646 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 22 Dec 2025 14:21:38 +0000 Subject: [PATCH] Bump the python-requirements group across 1 directory with 21 updates Bumps the python-requirements group with 21 updates in the /envs directory: | Package | From | To | | --- | --- | --- | | [simpleitk](https://github.com/SimpleITK/SimpleITK) | `2.5.0` | `2.5.3` | | [coverage](https://github.com/coveragepy/coveragepy) | `7.8.2` | `7.13.0` | | [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.4.3` | `4.5.1` | | [kaggle](https://github.com/Kaggle/kaggle-api) | `1.7.4.5` | `1.8.2` | | [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.1` | `3.10.8` | | [monai](https://github.com/Project-MONAI/MONAI) | `1.4.0` | `1.5.1` | | [nibabel](https://github.com/nipy/nibabel) | `5.3.2` | `5.3.3` | | [pandas](https://github.com/pandas-dev/pandas) | `2.2.3` | `2.3.3` | | [plotly](https://github.com/plotly/plotly.py) | `6.1.2` | `6.5.0` | | [pre-commit](https://github.com/pre-commit/pre-commit) | `4.2.0` | `4.5.1` | | [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `6.1.1` | `7.0.0` | | [pytest-mock](https://github.com/pytest-dev/pytest-mock) | `3.14.1` | `3.15.1` | | [pytest](https://github.com/pytest-dev/pytest) | `8.3.5` | `9.0.2` | | [rich](https://github.com/Textualize/rich) | `14.0.0` | `14.2.0` | | [ruff](https://github.com/astral-sh/ruff) | `0.11.12` | `0.14.10` | | [safetensors](https://github.com/huggingface/safetensors) | `0.5.3` | `0.7.0` | | [scikit-image](https://github.com/scikit-image/scikit-image) | `0.25.2` | `0.26.0` | | [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.6.1` | `1.8.0` | | [scipy](https://github.com/scipy/scipy) | `1.15.2` | `1.16.3` | | [timm](https://github.com/huggingface/pytorch-image-models) | `1.0.15` | `1.0.22` | | [wandb](https://github.com/wandb/wandb) | `0.19.11` | `0.23.1` | Updates `simpleitk` from 2.5.0 to 2.5.3 - [Release notes](https://github.com/SimpleITK/SimpleITK/releases) - [Commits](https://github.com/SimpleITK/SimpleITK/compare/v2.5.0...v2.5.3) Updates `coverage` from 7.8.2 to 7.13.0 - [Release notes](https://github.com/coveragepy/coveragepy/releases) - [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst) - [Commits](https://github.com/coveragepy/coveragepy/compare/7.8.2...7.13.0) Updates `jupyterlab` from 4.4.3 to 4.5.1 - [Release notes](https://github.com/jupyterlab/jupyterlab/releases) - [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md) - [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.4.3...@jupyterlab/lsp@4.5.1) Updates `kaggle` from 1.7.4.5 to 1.8.2 - [Release notes](https://github.com/Kaggle/kaggle-api/releases) - [Changelog](https://github.com/Kaggle/kaggle-api/blob/main/CHANGELOG.md) - [Commits](https://github.com/Kaggle/kaggle-api/commits) Updates `matplotlib` from 3.10.1 to 3.10.8 - [Release notes](https://github.com/matplotlib/matplotlib/releases) - [Commits](https://github.com/matplotlib/matplotlib/compare/v3.10.1...v3.10.8) Updates `monai` from 1.4.0 to 1.5.1 - [Release notes](https://github.com/Project-MONAI/MONAI/releases) - [Changelog](https://github.com/Project-MONAI/MONAI/blob/dev/CHANGELOG.md) - [Commits](https://github.com/Project-MONAI/MONAI/compare/1.4.0...1.5.1) Updates `nibabel` from 5.3.2 to 5.3.3 - [Release notes](https://github.com/nipy/nibabel/releases) - [Changelog](https://github.com/nipy/nibabel/blob/5.3.3/Changelog) - [Commits](https://github.com/nipy/nibabel/compare/5.3.2...5.3.3) Updates `pandas` from 2.2.3 to 2.3.3 - [Release notes](https://github.com/pandas-dev/pandas/releases) - [Commits](https://github.com/pandas-dev/pandas/compare/v2.2.3...v2.3.3) Updates `plotly` from 6.1.2 to 6.5.0 - [Release notes](https://github.com/plotly/plotly.py/releases) - [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md) - [Commits](https://github.com/plotly/plotly.py/compare/v6.1.2...v6.5.0) Updates `pre-commit` from 4.2.0 to 4.5.1 - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](https://github.com/pre-commit/pre-commit/compare/v4.2.0...v4.5.1) Updates `pytest-cov` from 6.1.1 to 7.0.0 - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-cov/compare/v6.1.1...v7.0.0) Updates `pytest-mock` from 3.14.1 to 3.15.1 - [Release notes](https://github.com/pytest-dev/pytest-mock/releases) - [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-mock/compare/v3.14.1...v3.15.1) Updates `pytest` from 8.3.5 to 9.0.2 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/8.3.5...9.0.2) Updates `rich` from 14.0.0 to 14.2.0 - [Release notes](https://github.com/Textualize/rich/releases) - [Changelog](https://github.com/Textualize/rich/blob/master/CHANGELOG.md) - [Commits](https://github.com/Textualize/rich/compare/v14.0.0...v14.2.0) Updates `ruff` from 0.11.12 to 0.14.10 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.11.12...0.14.10) Updates `safetensors` from 0.5.3 to 0.7.0 - [Release notes](https://github.com/huggingface/safetensors/releases) - [Changelog](https://github.com/huggingface/safetensors/blob/main/RELEASE.md) - [Commits](https://github.com/huggingface/safetensors/compare/v0.5.3...v0.7.0) Updates `scikit-image` from 0.25.2 to 0.26.0 - [Release notes](https://github.com/scikit-image/scikit-image/releases) - [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt) - [Commits](https://github.com/scikit-image/scikit-image/compare/v0.25.2...v0.26.0) Updates `scikit-learn` from 1.6.1 to 1.8.0 - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/1.6.1...1.8.0) Updates `scipy` from 1.15.2 to 1.16.3 - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.15.2...v1.16.3) Updates `timm` from 1.0.15 to 1.0.22 - [Release notes](https://github.com/huggingface/pytorch-image-models/releases) - [Commits](https://github.com/huggingface/pytorch-image-models/compare/v1.0.15...v1.0.22) Updates `wandb` from 0.19.11 to 0.23.1 - [Release notes](https://github.com/wandb/wandb/releases) - [Changelog](https://github.com/wandb/wandb/blob/main/CHANGELOG.md) - [Commits](https://github.com/wandb/wandb/compare/v0.19.11...v0.23.1) --- updated-dependencies: - dependency-name: simpleitk dependency-version: 2.5.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-requirements - dependency-name: coverage dependency-version: 7.13.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: jupyterlab dependency-version: 4.5.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: kaggle dependency-version: 1.8.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: matplotlib dependency-version: 3.10.8 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-requirements - dependency-name: monai dependency-version: 1.5.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: nibabel dependency-version: 5.3.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-requirements - dependency-name: pandas dependency-version: 2.3.3 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: plotly dependency-version: 6.5.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: pre-commit dependency-version: 4.5.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: pytest-cov dependency-version: 7.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-requirements - dependency-name: pytest-mock dependency-version: 3.15.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: pytest dependency-version: 9.0.2 dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-requirements - dependency-name: rich dependency-version: 14.2.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: ruff dependency-version: 0.14.10 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: safetensors dependency-version: 0.7.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: scikit-image dependency-version: 0.26.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: scikit-learn dependency-version: 1.8.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: scipy dependency-version: 1.16.3 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: timm dependency-version: 1.0.22 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-requirements - dependency-name: wandb dependency-version: 0.23.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements ... Signed-off-by: dependabot[bot] --- envs/requirements.txt | 42 +++++++++++++++++++++--------------------- 1 file changed, 21 insertions(+), 21 deletions(-) diff --git a/envs/requirements.txt b/envs/requirements.txt index 061adc6..a307f1d 100644 --- a/envs/requirements.txt +++ b/envs/requirements.txt @@ -1,26 +1,26 @@ -SimpleITK==2.5.0 -coverage==7.8.2 +SimpleITK==2.5.3 +coverage==7.13.0 einops==0.8.1 hydra-core==1.3.2 -jupyterlab==4.4.3 -kaggle==1.7.4.5 -matplotlib==3.10.1 -monai==1.4.0 +jupyterlab==4.5.1 +kaggle==1.8.2 +matplotlib==3.10.8 +monai==1.5.1 nbmake==1.5.5 -nibabel==5.3.2 +nibabel==5.3.3 numpy==1.26.4 -pandas==2.2.3 -plotly==6.1.2 -pre-commit==4.2.0 +pandas==2.3.3 +plotly==6.5.0 +pre-commit==4.5.1 pydicom==3.0.1 -pytest-cov==6.1.1 -pytest-mock==3.14.1 -pytest==8.3.5 -rich==14.0.0 -ruff==0.11.12 -safetensors==0.5.3 -scikit-image==0.25.2 -scikit-learn==1.6.1 -scipy==1.15.2 -timm==1.0.15 -wandb==0.19.11 +pytest-cov==7.0.0 +pytest-mock==3.15.1 +pytest==9.0.2 +rich==14.2.0 +ruff==0.14.10 +safetensors==0.7.0 +scikit-image==0.26.0 +scikit-learn==1.8.0 +scipy==1.16.3 +timm==1.0.22 +wandb==0.23.1