Website file tree contains broken links

# Summary

| Status         | Count |
|----------------|-------|
| 🔍 Total       | 3970  |
| ✅ Successful  | 3206  |
| ⏳ Timeouts    | 58    |
| 🔀 Redirected  | 80    |
| 👻 Excluded    | 114   |
| ❓ Unknown     | 0     |
| 🚫 Errors      | 21    |
| ⛔ Unsupported | 491   |

## Errors per input

### Errors in _build/html/howto_guides/data_plan/index.html

* [302] <https://dmptool.org/plans?plan%5Bfunder%5D%5Bid%5D=%7B+%22id%22%3A+4265%2C+%22name[%E2%80%A6]Microbiome+Data+Collaborative%22+%7D&plan%5Btemplate_id%5D=1321> | Rejected status code: 302 Found (configurable with "accept" option): Redirects may have been limited by "max-redirects".

### Errors in _build/html/howto_guides/submit2nmdc/index.html

* [404] <https://hupo.org/Proteomics-Standards-Initiative-(PSI)> | Rejected status code: 404 Not Found (configurable with "accept" option)

### Errors in _build/html/reference/software_development/index.html

* [403] <https://chatgpt.com/> | Rejected status code: 403 Forbidden (configurable with "accept" option)
* [403] <https://claude.ai/> | Rejected status code: 403 Forbidden (configurable with "accept" option)
* [429] <https://www.gnu.org/software/make/> | Rejected status code: 429 Too Many Requests (configurable with "accept" option)
* [429] <https://www.gnu.org/software/make/manual/html_node/Phony-Targets.html> | Rejected status code: 429 Too Many Requests (configurable with "accept" option)
* [429] <https://www.gnu.org/software/make/manual/html_node/Rule-Example.html> | Rejected status code: 429 Too Many Requests (configurable with "accept" option)

### Errors in _build/html/runtime/howto-guides/author-changesheets/index.html

* [404] <https://microbiomedata.github.io/nmdc-schema/doi/> | Rejected status code: 404 Not Found (configurable with "accept" option)

### Errors in _build/html/runtime/nb/wf_automation/index.html

* [404] <https://microbiomedata.github.io/nmdc-schema/Activity/> | Rejected status code: 404 Not Found (configurable with "accept" option)

### Errors in _build/html/runtime/tutorials/metadata-in/index.html

* [404] <https://api.microbiomedata.org/nmdcschema/biosample_set/fake> | Rejected status code: 404 Not Found (configurable with "accept" option)

### Errors in _build/html/workflows/chapters/1_Metagenome_Workflow_Overview/index.html

* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-int-0.1.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-int.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_1.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_2.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR8553641/SRR8553641.fastq.gz> | Timeout

### Errors in _build/html/workflows/chapters/2_Read_Based_Taxonomy/index.html

* [404] <https://github.com/poeli/GOTTCHA2> | Rejected status code: 404 Not Found (configurable with "accept" option)
* [404] <https://github.com/poeli/GOTTCHA2/blob/master/LICENSE> | Rejected status code: 404 Not Found (configurable with "accept" option)
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-0.1_MetaG/ReadbasedAnalysis/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-0.1_MetaG/ReadsQC/SRR7877884-int-0/SRR7877884-int-0.filtered.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-int-0.1.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-int.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_1.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_2.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_MetaG/ReadsQC/SRR7877884-int/SRR7877884-int.filtered.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR8553641/SRR8553641.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR13128014.pacbio.subsample/ReadbasedAnalysis/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR13128014.pacbio.subsample/ReadsQC/SRR13128014.pacbio.subsample.fastq/SRR13128014.pacbio.subsample.fastq_filtered.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR13128014.pacbio.subsample/SRR13128014.pacbio.subsample.ccs.fastq.gz> | Timeout

### Errors in _build/html/workflows/chapters/3_Metagenome_Reads_QC/index.html

* [404] <https://github.com/microbiomedata/ReadsQC/blob/documentation/input.json> | Rejected status code: 404 Not Found (configurable with "accept" option)
* [302] <https://jgi.doe.gov/data-and-tools/bbtools/> | Error (cached)
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/ReadsQC_small_test_data.tgz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-0.1_MetaG/ReadsQC/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-int-0.1.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-int.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_1.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_2.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR13128014.pacbio.subsample/ReadsQC/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR13128014.pacbio.subsample/SRR13128014.pacbio.subsample.ccs.fastq.gz> | Timeout

### Errors in _build/html/workflows/chapters/4_Metagenome_Assembly/index.html

* [302] <https://jgi.doe.gov/data-and-tools/bbtools/> | Rejected status code: 302 Found (configurable with "accept" option): Redirects may have been limited by "max-redirects".
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaAssembly_large_test_data.tgz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaAssembly_small_test_data.tgz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-0.1_MetaG/MetagenomeAssembly/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-0.1_MetaG/ReadsQC/SRR7877884-int-0/SRR7877884-int-0.filtered.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-int-0.1.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884-int.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_1.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_2.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR7877884/SRR7877884_MetaG/ReadsQC/SRR7877884-int/SRR7877884-int.filtered.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR13128014.pacbio.subsample/MetagenomeAssembly/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR13128014.pacbio.subsample/ReadsQC/SRR13128014.pacbio.subsample.fastq/SRR13128014.pacbio.subsample.fastq_filtered.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/SRR13128014.pacbio.subsample/SRR13128014.pacbio.subsample.ccs.fastq.gz> | Timeout

### Errors in _build/html/workflows/chapters/5_Metagenome_and_Metatranscriptome_Annotation/index.html

* [403] <https://doi.org/10.1128/msystems.00804-20> | Rejected status code: 403 Forbidden (configurable with "accept" option)
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/annotation_output/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/assembly_output/SRR11678315-int-0.1_contigs.fna> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/readsqc_output/SRR11678315-int-0.1_filtered.fastq.gz> | Timeout

### Errors in _build/html/workflows/chapters/6_Metagenome_Assembled_Genome/index.html

* [403] <https://doi.org/10.1093/bioinformatics/btz848> | Rejected status code: 403 Forbidden (configurable with "accept" option)
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaMAGs_test_dataset.tgz> | Timeout

### Errors in _build/html/workflows/chapters/7_Metatranscriptome_Workflow_Overview/index.html

* [302] <https://jgi.doe.gov/data-and-tools/bbtools/> | Error (cached)
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678313.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/SRR11678315.fastq.gz> | Timeout

### Errors in _build/html/workflows/chapters/8_Metatranscriptome_Reads_QC/index.html

* [302] <https://jgi.doe.gov/data-and-tools/bbtools/> | Error (cached)
* [302] <https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/data-preprocessing/> | Rejected status code: 302 Found (configurable with "accept" option): Redirects may have been limited by "max-redirects".
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/readsqc_output/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/project/m3408//test_data/metaT/SRR11678315/SRR11678315.fastq.gz> | Timeout

### Errors in _build/html/workflows/chapters/9_Metatranscriptome_Assembly/index.html

* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/assembly_output/> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/readsqc_output/SRR11678315-int-0.1_filtered.fastq.gz> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/SRR11678315.fastq.gz> | Timeout

### Errors in _build/html/workflows/chapters/10_Metatranscriptome_Expression/index.html

* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/annotation_output/SRR11678315-int-0.1_contig_names_mapping.tsv> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/annotation_output/SRR11678315-int-0.1_functional_annotation.gff> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/assembly_output/SRR11678315-int-0.1_pairedMapped_sorted.bam> | Timeout
* [TIMEOUT] <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/readcounts_output/> | Timeout

### Errors in _build/html/workflows/chapters/13_LCMS_Metabolomics/index.html

* [404] <https://github.com/microbiomedata/metaMS/blob/master/wdl/metaMS_lcmsmetabolomics.wdl> | Rejected status code: 404 Not Found (configurable with "accept" option)
* [TIMEOUT] <https://gnps-external.ucsd.edu/gnpslibrary> | Timeout

## Redirects per input

### Redirects in _build/html/_hooks/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/_hooks/README.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/_hooks/README.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2F_hooks%2FREADME.md

### Redirects in _build/html/_templates/footer.html

* [200] <https://microbiomedata.org/privacy> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://microbiomedata.org/privacy --[307]--> https://www.lbl.gov/terms-and-conditions/web-privacy-notice/

### Redirects in _build/html/explanation/community_conversations/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/explanation/community_conversations.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/explanation/community_conversations.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fexplanation%2Fcommunity_conversations.md

### Redirects in _build/html/explanation/fair_data/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/explanation/fair_data.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/explanation/fair_data.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fexplanation%2Ffair_data.md
* [200] <https://www.go-fair.org/implementation-networks/overview/fair-microbiome/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://www.go-fair.org/implementation-networks/overview/fair-microbiome/ --[301]--> https://www.go-fair.org/implementation-networks/overview/implementation-networks-archive/fair-microbiome/
* [200] <https://www.nature.com/articles/sdata201618> | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://www.nature.com/articles/sdata201618 --[303]--> https://idp.nature.com/authorize?response_type=cookie&client_id=grover&redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fsdata201618 --[302]--> https://idp.nature.com/transit?redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fsdata201618&code=c8df101a-20cf-401e-b2e6-74bbc864b237 --[302]--> https://www.nature.com/articles/sdata201618?error=cookies_not_supported&code=c8df101a-20cf-401e-b2e6-74bbc864b237

### Redirects in _build/html/howto_guides/api_gui/index.html

* [200] <https://docs.openalex.org/how-to-use-the-api/get-lists-of-entities/filter-entity-lists> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.openalex.org/how-to-use-the-api/get-lists-of-entities/filter-entity-lists --[301]--> https://developers.openalex.org/
* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/api_gui.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/api_gui.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fapi_gui.md
* [200] <https://microbiomedata.github.io/nmdc-schema/DataObject> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://microbiomedata.github.io/nmdc-schema/DataObject --[301]--> https://microbiomedata.github.io/nmdc-schema/DataObject/
* [200] <https://w3id.org/nmdc/Biosample> | Redirect: Followed 4 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/Biosample --[307]--> https://api.microbiomedata.org/objects/Biosample --[307]--> https://api.microbiomedata.org/objects/Biosample --[307]--> https://microbiomedata.github.io/nmdc-schema/Biosample --[301]--> https://microbiomedata.github.io/nmdc-schema/Biosample/
* [200] <https://w3id.org/nmdc/DataObject/> | Redirect: Followed 5 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/DataObject/ --[307]--> https://api.microbiomedata.org/objects/DataObject/ --[307]--> http://api.microbiomedata.org/objects/DataObject --[308]--> https://api.microbiomedata.org/objects/DataObject --[307]--> https://microbiomedata.github.io/nmdc-schema/DataObject --[301]--> https://microbiomedata.github.io/nmdc-schema/DataObject/
* [200] <https://w3id.org/nmdc/PlannedProcess/> | Redirect: Followed 5 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/PlannedProcess/ --[307]--> https://api.microbiomedata.org/objects/PlannedProcess/ --[307]--> http://api.microbiomedata.org/objects/PlannedProcess --[308]--> https://api.microbiomedata.org/objects/PlannedProcess --[307]--> https://microbiomedata.github.io/nmdc-schema/PlannedProcess --[301]--> https://microbiomedata.github.io/nmdc-schema/PlannedProcess/
* [200] <https://w3id.org/nmdc/Study> | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/Study --[307]--> https://api.microbiomedata.org/objects/Study --[307]--> https://microbiomedata.github.io/nmdc-schema/Study --[301]--> https://microbiomedata.github.io/nmdc-schema/Study/

### Redirects in _build/html/howto_guides/data_plan/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/data_plan.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/data_plan.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fdata_plan.md
* [200] <https://w3id.org/nmdc/nmdc> | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/nmdc --[307]--> https://microbiomedata.github.io/nmdc-schema --[301]--> https://microbiomedata.github.io/nmdc-schema/

### Redirects in _build/html/howto_guides/globus/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/globus.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/globus.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fglobus.md
* [200] <https://globus.org/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://globus.org/ --[301]--> https://www.globus.org/

### Redirects in _build/html/howto_guides/portal_guide/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/portal_guide.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/portal_guide.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fportal_guide.md
* [200] <https://microbiomedata.org/nmdc-data-use-policy> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://microbiomedata.org/nmdc-data-use-policy --[301]--> https://microbiomedata.org/nmdc-data-use-policy/

### Redirects in _build/html/howto_guides/submit2nmdc/index.html

* [200] <https://apps.apple.com/app/apple-store/id6575364655?pt=278434&ct=docs&mt=8> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://apps.apple.com/app/apple-store/id6575364655?pt=278434&ct=docs&mt=8 --[301]--> https://apps.apple.com/us/app/nmdc-field-notes/id6575364655?ct=docs&pt=278434
* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/submit2nmdc.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/submit2nmdc.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fsubmit2nmdc.md

### Redirects in _build/html/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/index.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/index.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Findex.md
* [200] <https://microbiomedata.org/contact> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://microbiomedata.org/contact --[301]--> https://microbiomedata.org/contact/

### Redirects in _build/html/reference/data_portal/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/reference/data_portal.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/reference/data_portal.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Freference%2Fdata_portal.md

### Redirects in _build/html/reference/software_development/index.html

* [200] <https://docs.pytest.org/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.pytest.org/ --[302]--> https://docs.pytest.org/en/stable/
* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/reference/software_development.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/reference/software_development.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Freference%2Fsoftware_development.md
* [200] <https://jaws-docs.readthedocs.io/en/latest/Resources/best_practices.html> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://jaws-docs.readthedocs.io/en/latest/Resources/best_practices.html --[302]--> https://jaws-docs.jgi.doe.gov/en/latest/Resources/best_practices.html
* [200] <https://nodejs.org/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://nodejs.org/ --[307]--> https://nodejs.org/en

### Redirects in _build/html/runtime/admin/index.html

* [200] <https://api.microbiomedata.org/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://api.microbiomedata.org/ --[303]--> https://api.microbiomedata.org/docs
* [200] <https://snappass.lbl.gov/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://snappass.lbl.gov/ --[302]--> https://lbl.cloudflareaccess.com/cdn-cgi/access/login/snappass.lbl.gov?kid=7e8bd58c5424f77c92ca6c07cebffc7f7d2b34bb71f69881db9d796aeb7091c6&meta=eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsImtpZCI6Ijc2ODhhZTc3YmQ4NTMzN2EwZTQ4YmVmOWM0MTc4M2NiZGJhZDdlMWJlMzI4MzNhYjU0ZDExNWY2ZWM2Yjk3YjcifQ.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.rx1jEveELDmVLwKaAAvbPX8ABllrKaACrgdsqllD29UHkqtS1ADbhEdfAEPh9IWTJSeReigoA7_LpdQSQyqrJ5soq_zH1lpxTWsrpFh25P8wWIKF0k7x7Dt7RIIuhJUIwBKiOgKbiKPyjkzIhHWh-SE8GdCk_vBgUGMLTWUfYQ4fQ-MqU_hJMyESU1I7p0oNAK5DhgQ2zUN9--Toc4PRF3BEL9G2NMbA80j2OaqBq4RN22LHtPUJHF-4PcXe98Ib7D7brrFPyT7Kq3_KHtvf6x002ybyBxq7q8ib2TcclFuGx2WiPkAWTpZQZ7pKvVTPVbOaa3lBmOPcPXFdncMNcQ&redirect_url=%2F

### Redirects in _build/html/runtime/explanation/identifiers/index.html

* [200] <https://w3id.org/nmdc/Biosample> | Redirect: Followed 6 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/Biosample --[307]--> https://api.microbiomedata.org/objects/Biosample --[307]--> https://api.microbiomedata.org/objects/Biosample --[307]--> https://microbiomedata.github.io/nmdc-schema/Biosample --[301]--> https://microbiomedata.github.io/nmdc-schema/Biosample/ --[307]--> https://microbiomedata.github.io/nmdc-schema/Biosample --[301]--> https://microbiomedata.github.io/nmdc-schema/Biosample/
* [200] <https://w3id.org/nmdc/id> | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/id --[307]--> https://api.microbiomedata.org/objects/id --[307]--> https://microbiomedata.github.io/nmdc-schema/id --[301]--> https://microbiomedata.github.io/nmdc-schema/id/

### Redirects in _build/html/runtime/howto-guides/claim-and-run-jobs/index.html

* [200] <https://docs.dagster.io/concepts/ops-jobs-graphs/jobs-graphs> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/ops-jobs-graphs/jobs-graphs --[308]--> https://docs.dagster.io/guides/build/ops/graphs
* [200] <https://docs.dagster.io/concepts/ops-jobs-graphs/ops> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/ops-jobs-graphs/ops --[308]--> https://docs.dagster.io/guides/build/ops
* [200] <https://docs.dagster.io/concepts/partitions-schedules-sensors/sensors> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/partitions-schedules-sensors/sensors --[308]--> https://docs.dagster.io/guides/automate/sensors
* [200] <https://docs.dagster.io/concepts/repositories-workspaces/repositories> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/repositories-workspaces/repositories --[308]--> https://docs.dagster.io/api/dagster/repositories

### Redirects in _build/html/runtime/howto-guides/create-triggers/index.html

* [200] <https://docs.dagster.io/concepts/partitions-schedules-sensors/sensors> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/partitions-schedules-sensors/sensors --[308]--> https://docs.dagster.io/guides/automate/sensors

### Redirects in _build/html/runtime/howto-guides/update-sensors-ops/index.html

* [200] <https://docs.dagster.io/concepts/ops-jobs-graphs/jobs-graphs> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/ops-jobs-graphs/jobs-graphs --[308]--> https://docs.dagster.io/guides/build/ops/graphs
* [200] <https://docs.dagster.io/concepts/repositories-workspaces/repositories> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/repositories-workspaces/repositories --[308]--> https://docs.dagster.io/api/dagster/repositories
* [200] <https://docs.dagster.io/concepts/resources> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/resources --[308]--> https://docs.dagster.io/guides/build/external-resources
* [200] <https://docs.dagster.io/deployment/executors> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/deployment/executors --[308]--> https://docs.dagster.io/guides/operate/run-executors
* [200] <https://docs.dagster.io/deployment/run-launcher> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/deployment/run-launcher --[308]--> https://docs.dagster.io/deployment/execution/run-launchers
* [200] <https://docs.dagster.io/guides/deploy/code-locations/workspace-yaml> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/guides/deploy/code-locations/workspace-yaml --[308]--> https://docs.dagster.io/guides/build/projects/workspaces/workspace-yaml

### Redirects in _build/html/runtime/nb/api_access_via_python/index.html

* [200] <https://github.com/microbiomedata/nmdc-runtime/issues/new> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/nmdc-runtime/issues/new --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fnmdc-runtime%2Fissues%2Fnew

### Redirects in _build/html/runtime/tutorials/json/index.html

* [200] <https://docs.mongodb.com/manual/tutorial/query-documents/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.mongodb.com/manual/tutorial/query-documents/ --[301]--> https://www.mongodb.com/docs/manual/tutorial/query-documents/

### Redirects in _build/html/runtime/tutorials/metadata-in/index.html

* [200] <https://docs.mongodb.com/v4.4/reference/command/delete/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.mongodb.com/v4.4/reference/command/delete/ --[301]--> https://www.mongodb.com/docs/v4.4/reference/command/delete/
* [200] <https://gist.github.com/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://gist.github.com/ --[302]--> https://gist.github.com/starred

### Redirects in _build/html/tutorials/nav_data_portal/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/tutorials/nav_data_portal.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/tutorials/nav_data_portal.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Ftutorials%2Fnav_data_portal.md

### Redirects in _build/html/tutorials/submission_portal/index.html

* [200] <https://github.com/microbiomedata/docs/edit/main/content/home/src/tutorials/submission_portal.md> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/tutorials/submission_portal.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Ftutorials%2Fsubmission_portal.md

### Redirects in _build/html/workflows/chapters/2_Read_Based_Taxonomy/index.html

* [200] <http://ccb.jhu.edu/software/kraken2> | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: http://ccb.jhu.edu/software/kraken2 --[308]--> https://ccb.jhu.edu/software/kraken2 --[301]--> http://ccb.jhu.edu/software/kraken2/ --[308]--> https://ccb.jhu.edu/software/kraken2/
* [200] <http://www.ccb.jhu.edu/software/centrifuge> | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: http://www.ccb.jhu.edu/software/centrifuge --[308]--> https://www.ccb.jhu.edu/software/centrifuge --[301]--> http://www.ccb.jhu.edu/software/centrifuge/ --[308]--> https://www.ccb.jhu.edu/software/centrifuge/

### Redirects in _build/html/workflows/chapters/4_Metagenome_Assembly/index.html

* [200] <https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/ --[301]--> https://www.ncbi.nlm.nih.gov/genbank/genome_agp_specification/

### Redirects in _build/html/workflows/chapters/5_Metagenome_and_Metatranscriptome_Annotation/index.html

* [200] <http://reusabledata.org/cath> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/cath --[301]--> https://reusabledata.org/cath
* [200] <http://reusabledata.org/kegg-ftp> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/kegg-ftp --[301]--> https://reusabledata.org/kegg-ftp
* [200] <http://reusabledata.org/rfam> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/rfam --[301]--> https://reusabledata.org/rfam
* [200] <http://reusabledata.org/smart> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/smart --[301]--> https://reusabledata.org/smart
* [200] <http://reusabledata.org/supfam> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/supfam --[301]--> https://reusabledata.org/supfam

### Redirects in _build/html/workflows/chapters/6_Metagenome_Assembled_Genome/index.html

* [200] <http://reusabledata.org/cogs> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/cogs --[301]--> https://reusabledata.org/cogs
* [200] <http://reusabledata.org/pfam> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/pfam --[301]--> https://reusabledata.org/pfam
* [200] <http://reusabledata.org/tigrfams> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/tigrfams --[301]--> https://reusabledata.org/tigrfams
* [200] <http://www.microbesonline.org/fasttree/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://www.microbesonline.org/fasttree/ --[301]--> https://microbesonline.org/fasttree/
* [200] <http://www.microbesonline.org/fasttree/FastTree.c> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://www.microbesonline.org/fasttree/FastTree.c --[301]--> https://microbesonline.org/fasttree/FastTree.c
* [200] <https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-209> | Redirect: Followed 4 redirects resolving to the final status of: OK. Redirects: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-209 --[301]--> https://link.springer.com/article/10.1186/1471-2105-8-209 --[303]--> https://idp.springer.com/authorize?response_type=cookie&client_id=springerlink&redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1186%2F1471-2105-8-209 --[302]--> https://idp.springer.com/transit?redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1186%2F1471-2105-8-209&code=4eddf93d-66d9-4b06-8f00-a05ffdede41d --[302]--> https://link.springer.com/article/10.1186/1471-2105-8-209?error=cookies_not_supported&code=4eddf93d-66d9-4b06-8f00-a05ffdede41d
* [200] <https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02155-4> | Redirect: Followed 4 redirects resolving to the final status of: OK. Redirects: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02155-4 --[301]--> https://link.springer.com/article/10.1186/s13059-020-02155-4 --[303]--> https://idp.springer.com/authorize?response_type=cookie&client_id=springerlink&redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1186%2Fs13059-020-02155-4 --[302]--> https://idp.springer.com/transit?redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1186%2Fs13059-020-02155-4&code=dac8b4ef-d18b-445c-9dad-cd7c3f28c1d3 --[302]--> https://link.springer.com/article/10.1186/s13059-020-02155-4?error=cookies_not_supported&code=dac8b4ef-d18b-445c-9dad-cd7c3f28c1d3
* [200] <https://github.com/microbiomedata/nmdc-schema/files/14377315/nmdc_wfmag-11-6scpgx92.1_heatmap.pdf> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/nmdc-schema/files/14377315/nmdc_wfmag-11-6scpgx92.1_heatmap.pdf --[302]--> https://objects.githubusercontent.com/github-production-repository-file-5c1aeb/354168085/14377315?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20260605%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20260605T232012Z&X-Amz-Expires=300&X-Amz-Signature=b75e708ec49e676d1bb535ba5246517547750d3a265568e1d9fdc87418d200a8&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3Bfilename%3Dnmdc_wfmag-11-6scpgx92.1_heatmap.pdf&response-content-type=application%2Fpdf
* [200] <https://github.com/microbiomedata/nmdc-schema/files/14377316/nmdc_wfmag-11-6scpgx92.1_barplot.pdf> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/nmdc-schema/files/14377316/nmdc_wfmag-11-6scpgx92.1_barplot.pdf --[302]--> https://objects.githubusercontent.com/github-production-repository-file-5c1aeb/354168085/14377316?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20260605%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20260605T232012Z&X-Amz-Expires=300&X-Amz-Signature=b790562e62238f5325eb908899391ec34fe441733ccc4ec68e7d6d29441bd682&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3Bfilename%3Dnmdc_wfmag-11-6scpgx92.1_barplot.pdf&response-content-type=application%2Fpdf
* [200] <https://github.com/psf/requests/blob/master/LICENSE> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/psf/requests/blob/master/LICENSE --[302]--> https://github.com/psf/requests/blob/main/LICENSE
* [200] <https://github.com/PyMySQL/PyMySQL/blob/master/LICENSE> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/PyMySQL/PyMySQL/blob/master/LICENSE --[302]--> https://github.com/PyMySQL/PyMySQL/blob/main/LICENSE
* [200] <https://github.com/user-attachments/assets/fee36f54-914c-45f7-bc07-379b4da4ea72> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/user-attachments/assets/fee36f54-914c-45f7-bc07-379b4da4ea72 --[302]--> https://github-production-user-asset-6210df.s3.amazonaws.com/737589/354722121-fee36f54-914c-45f7-bc07-379b4da4ea72.png?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20260605%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20260605T232013Z&X-Amz-Expires=300&X-Amz-Signature=32489f5d25d1858f787f29e9aeb38814dbda1d40a7f27a6ee85966dd9146e197&X-Amz-SignedHeaders=host&response-content-type=image%2Fpng
* [200] <https://github.com/user-attachments/files/16498858/MetaG_test_ko_matrix.txt> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/user-attachments/files/16498858/MetaG_test_ko_matrix.txt --[302]--> https://objects.githubusercontent.com/github-production-repository-file-5c1aeb/265964562/16498858?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20260605%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20260605T232012Z&X-Amz-Expires=300&X-Amz-Signature=dac7316122587f29e780bf30580b52df6d42a62454b3b834b06ace5d5767b7b6&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3Bfilename%3DMetaG_test_ko_matrix.txt&response-content-type=text%2Fplain
* [200] <https://opensource.org/licenses/MIT> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://opensource.org/licenses/MIT --[301]--> https://opensource.org/license/MIT
* [200] <https://www.nature.com/articles/s41579-020-0377-0> | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://www.nature.com/articles/s41579-020-0377-0 --[303]--> https://idp.nature.com/authorize?response_type=cookie&client_id=grover&redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41579-020-0377-0 --[302]--> https://idp.nature.com/transit?redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41579-020-0377-0&code=3aadd853-9c19-4c55-805a-67d08a1f1be9 --[302]--> https://www.nature.com/articles/s41579-020-0377-0?error=cookies_not_supported&code=3aadd853-9c19-4c55-805a-67d08a1f1be9
* [200] <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323987/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323987/ --[301]--> https://pmc.ncbi.nlm.nih.gov/articles/PMC6323987/

### Redirects in _build/html/workflows/chapters/10_Metatranscriptome_Expression/index.html

* [200] <https://readthedocs.org/> | Redirect: Followed 4 redirects resolving to the final status of: OK. Redirects: https://readthedocs.org/ --[302]--> https://app.readthedocs.org/welcome/ --[302]--> https://app.readthedocs.org/welcome/ --[302]--> https://about.readthedocs.com/?ref=app.readthedocs.org --[302]--> https://about.readthedocs.com/?ref=app.readthedocs.org
* [200] <https://www.sphinx-doc.org/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://www.sphinx-doc.org/ --[302]--> https://www.sphinx-doc.org/en/master/

### Redirects in _build/html/workflows/chapters/11_Metaproteomics/index.html

* [200] <https://opensource.org/licenses/BSD-2-Clause> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://opensource.org/licenses/BSD-2-Clause --[301]--> https://opensource.org/license/BSD-2-Clause
* [200] <https://readthedocs.org/> | Redirect: Followed 4 redirects resolving to the final status of: OK. Redirects: https://readthedocs.org/ --[302]--> https://app.readthedocs.org/welcome/ --[302]--> https://app.readthedocs.org/welcome/ --[302]--> https://about.readthedocs.com/?ref=app.readthedocs.org --[302]--> https://about.readthedocs.com/?ref=app.readthedocs.org
* [200] <https://www.sphinx-doc.org/> | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: https://www.sphinx-doc.org/ --[302]--> https://www.sphinx-doc.org/en/master/ --[302]--> https://www.sphinx-doc.org/en/master/

### Redirects in _build/html/workflows/chapters/12_GCMS_Metabolomics/index.html

* [200] <https://github.com/microbiomedata/metaMS/tree/master/data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/metaMS/tree/master/data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf --[301]--> https://github.com/microbiomedata/metaMS/blob/master/data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf

### Redirects in _build/html/workflows/chapters/14_Natural_Organic_Matter/index.html

* [200] <https://pypi.org/project/enviroMS/> | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://pypi.org/project/enviroMS/ --[301]--> https://pypi.org/project/EnviroMS/

[Full Github Actions output](https://github.com/microbiomedata/docs/actions/runs/27045162358?check_suite_focus=true)


Status	Count
🔍 Total	3970
✅ Successful	3206
⏳ Timeouts	58
🔀 Redirected	80
👻 Excluded	114
❓ Unknown	0
🚫 Errors	21
⛔ Unsupported	491

Uh oh!

Website file tree contains broken links #370

Description

Summary

Errors per input

Errors in _build/html/howto_guides/data_plan/index.html

Errors in _build/html/howto_guides/submit2nmdc/index.html

Errors in _build/html/reference/software_development/index.html

Errors in _build/html/runtime/howto-guides/author-changesheets/index.html

Errors in _build/html/runtime/nb/wf_automation/index.html

Errors in _build/html/runtime/tutorials/metadata-in/index.html

Errors in _build/html/workflows/chapters/1_Metagenome_Workflow_Overview/index.html

Errors in _build/html/workflows/chapters/2_Read_Based_Taxonomy/index.html

Errors in _build/html/workflows/chapters/3_Metagenome_Reads_QC/index.html

Errors in _build/html/workflows/chapters/4_Metagenome_Assembly/index.html

Errors in _build/html/workflows/chapters/5_Metagenome_and_Metatranscriptome_Annotation/index.html

Errors in _build/html/workflows/chapters/6_Metagenome_Assembled_Genome/index.html

Errors in _build/html/workflows/chapters/7_Metatranscriptome_Workflow_Overview/index.html

Errors in _build/html/workflows/chapters/8_Metatranscriptome_Reads_QC/index.html

Errors in _build/html/workflows/chapters/9_Metatranscriptome_Assembly/index.html

Errors in _build/html/workflows/chapters/10_Metatranscriptome_Expression/index.html

Errors in _build/html/workflows/chapters/13_LCMS_Metabolomics/index.html

Redirects per input

Redirects in _build/html/_hooks/index.html

Redirects in _build/html/_templates/footer.html

Redirects in _build/html/explanation/community_conversations/index.html

Redirects in _build/html/explanation/fair_data/index.html

Redirects in _build/html/howto_guides/api_gui/index.html

Redirects in _build/html/howto_guides/data_plan/index.html

Redirects in _build/html/howto_guides/globus/index.html

Redirects in _build/html/howto_guides/portal_guide/index.html

Redirects in _build/html/howto_guides/submit2nmdc/index.html

Redirects in _build/html/index.html

Redirects in _build/html/reference/data_portal/index.html

Redirects in _build/html/reference/software_development/index.html

Redirects in _build/html/runtime/admin/index.html

Redirects in _build/html/runtime/explanation/identifiers/index.html

Redirects in _build/html/runtime/howto-guides/claim-and-run-jobs/index.html

Redirects in _build/html/runtime/howto-guides/create-triggers/index.html

Redirects in _build/html/runtime/howto-guides/update-sensors-ops/index.html

Redirects in _build/html/runtime/nb/api_access_via_python/index.html

Redirects in _build/html/runtime/tutorials/json/index.html

Redirects in _build/html/runtime/tutorials/metadata-in/index.html

Redirects in _build/html/tutorials/nav_data_portal/index.html

Redirects in _build/html/tutorials/submission_portal/index.html

Redirects in _build/html/workflows/chapters/2_Read_Based_Taxonomy/index.html

Redirects in _build/html/workflows/chapters/4_Metagenome_Assembly/index.html

Redirects in _build/html/workflows/chapters/5_Metagenome_and_Metatranscriptome_Annotation/index.html

Redirects in _build/html/workflows/chapters/6_Metagenome_Assembled_Genome/index.html

Redirects in _build/html/workflows/chapters/10_Metatranscriptome_Expression/index.html

Redirects in _build/html/workflows/chapters/11_Metaproteomics/index.html

Redirects in _build/html/workflows/chapters/12_GCMS_Metabolomics/index.html

Redirects in _build/html/workflows/chapters/14_Natural_Organic_Matter/index.html

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