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dbChecker

dbChecker is a tool to check if the Annovar database format is correct and create an index file for Annovar to use.

Usage

usage: ./dbChecker [options] ...

Options

  • -d, --db_path <string>: Annovar database with path (string [=])
  • -b, --bin <int>: Number of bin using in Annovar database, default is 1000 (int [=1000])
  • -?, --help: Print this message

Outputs

  • <db_path>_confirm: A cleaned version of the input database with correct format.
  • <db_path>_confirm.idx: An index file for efficient querying in Annovar.