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The --output-log for augur filter/augur subsample is helpful for debugging why specific samples are being excluded. We already use it in a some pathogen repos (GH query)
Prompted by discussion re:dengue
Similar to #24
The
--output-logforaugur filter/augur subsampleis helpful for debugging why specific samples are being excluded. We already use it in a some pathogen repos (GH query)Pathogens (others TBD)