From 988254843dd9bba2a4f3219f63fbf359fd199b16 Mon Sep 17 00:00:00 2001 From: terraputix Date: Mon, 26 Jan 2026 17:10:39 +0100 Subject: [PATCH 1/5] build adaptions for better type interfaces and removal of py3.9 --- Cargo.lock | 475 ++++++++++++++--- Cargo.toml | 6 +- pyproject.toml | 8 +- python/omfiles/__init__.py | 2 +- python/omfiles/__init__.pyi | 13 + .../{omfiles.pyi => _rust/__init__.pyi} | 33 +- src/array_index.rs | 7 +- src/codecs.rs | 2 +- src/cpu_info.rs | 2 +- src/hierarchy.rs | 2 +- src/lib.rs | 12 +- src/reader.rs | 2 +- src/reader_async.rs | 2 +- src/typed_array.rs | 4 + src/writer.rs | 2 +- uv.lock | 486 ++---------------- 16 files changed, 525 insertions(+), 533 deletions(-) create mode 100644 python/omfiles/__init__.pyi rename python/omfiles/{omfiles.pyi => _rust/__init__.pyi} (96%) diff --git a/Cargo.lock b/Cargo.lock index c3c1b9a3..0b85d16f 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -197,13 +197,13 @@ dependencies = [ "bitflags", "cexpr", "clang-sys", - "itertools", + "itertools 0.13.0", "log", "prettyplease", "proc-macro2", "quote", "regex", - "rustc-hash", + "rustc-hash 2.1.1", "shlex", "syn", ] @@ -235,9 +235,9 @@ checksum = "5dd9dc738b7a8311c7ade152424974d8115f2cdad61e8dab8dac9f2362298510" [[package]] name = "cc" -version = "1.2.52" +version = "1.2.54" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cd4932aefd12402b36c60956a4fe0035421f544799057659ff86f923657aada3" +checksum = "6354c81bbfd62d9cfa9cb3c773c2b7b2a3a482d569de977fd0e961f6e7c00583" dependencies = [ "find-msvc-tools", "jobserver", @@ -262,9 +262,9 @@ checksum = "9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801" [[package]] name = "chrono" -version = "0.4.42" +version = "0.4.43" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "145052bdd345b87320e369255277e3fb5152762ad123a901ef5c262dd38fe8d2" +checksum = "fac4744fb15ae8337dc853fee7fb3f4e48c0fbaa23d0afe49c447b4fab126118" dependencies = [ "iana-time-zone", "js-sys", @@ -305,6 +305,12 @@ version = "0.8.21" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28" +[[package]] +name = "crunchy" +version = "0.2.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "460fbee9c2c2f33933d720630a6a0bac33ba7053db5344fac858d4b8952d77d5" + [[package]] name = "delegate" version = "0.13.5" @@ -373,9 +379,9 @@ checksum = "37909eebbb50d72f9059c3b6d82c0463f2ff062c9e95845c43a6c9c0355411be" [[package]] name = "find-msvc-tools" -version = "0.1.7" +version = "0.1.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f449e6c6c08c865631d4890cfacf252b3d396c9bcc83adb6623cdb02a8336c41" +checksum = "8591b0bcc8a98a64310a2fae1bb3e9b8564dd10e381e6e28010fde8e8e8568db" [[package]] name = "futures" @@ -479,6 +485,26 @@ dependencies = [ "slab", ] +[[package]] +name = "getopts" +version = "0.2.24" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "cfe4fbac503b8d1f88e6676011885f34b7174f46e59956bba534ba83abded4df" +dependencies = [ + "unicode-width", +] + +[[package]] +name = "getrandom" +version = "0.2.17" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ff2abc00be7fca6ebc474524697ae276ad847ad0a6b3faa4bcb027e9a4614ad0" +dependencies = [ + "cfg-if", + "libc", + "wasi", +] + [[package]] name = "getrandom" version = "0.3.4" @@ -579,6 +605,27 @@ dependencies = [ "rustversion", ] +[[package]] +name = "is-macro" +version = "0.3.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1d57a3e447e24c22647738e4607f1df1e0ec6f72e16182c4cd199f647cdfb0e4" +dependencies = [ + "heck", + "proc-macro2", + "quote", + "syn", +] + +[[package]] +name = "itertools" +version = "0.11.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b1c173a5686ce8bfa551b3563d0c2170bf24ca44da99c7ca4bfdab5418c3fe57" +dependencies = [ + "either", +] + [[package]] name = "itertools" version = "0.13.0" @@ -588,21 +635,30 @@ dependencies = [ "either", ] +[[package]] +name = "itertools" +version = "0.14.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2b192c782037fadd9cfa75548310488aabdbf3d2da73885b31bd0abd03351285" +dependencies = [ + "either", +] + [[package]] name = "jobserver" version = "0.1.34" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9afb3de4395d6b3e67a780b6de64b51c978ecf11cb9a462c66be7d4ca9039d33" dependencies = [ - "getrandom", + "getrandom 0.3.4", "libc", ] [[package]] name = "js-sys" -version = "0.3.83" +version = "0.3.85" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "464a3709c7f55f1f721e5389aa6ea4e3bc6aba669353300af094b29ffbdde1d8" +checksum = "8c942ebf8e95485ca0d52d97da7c5a2c387d0e7f0ba4c35e93bfcaee045955b3" dependencies = [ "once_cell", "wasm-bindgen", @@ -617,6 +673,12 @@ dependencies = [ "log", ] +[[package]] +name = "lalrpop-util" +version = "0.20.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "507460a910eb7b32ee961886ff48539633b788a36b65692b95f225b844c82553" + [[package]] name = "libc" version = "0.2.180" @@ -719,6 +781,16 @@ dependencies = [ "minimal-lexical", ] +[[package]] +name = "num-bigint" +version = "0.4.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a5e44f723f1133c9deac646763579fdb3ac745e418f2a7af9cd0c431da1f20b9" +dependencies = [ + "num-integer", + "num-traits", +] + [[package]] name = "num-complex" version = "0.4.6" @@ -759,7 +831,7 @@ dependencies = [ "num-traits", "pyo3", "pyo3-build-config", - "rustc-hash", + "rustc-hash 2.1.1", ] [[package]] @@ -792,12 +864,59 @@ version = "1.21.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d" +[[package]] +name = "ordered-float" +version = "5.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7f4779c6901a562440c3786d08192c6fbda7c1c2060edd10006b05ee35d10f2d" +dependencies = [ + "num-traits", +] + [[package]] name = "parking" version = "2.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f38d5652c16fde515bb1ecef450ab0f6a219d619a7274976324d5e377f7dceba" +[[package]] +name = "phf" +version = "0.11.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1fd6780a80ae0c52cc120a26a1a42c1ae51b247a253e4e06113d23d2c2edd078" +dependencies = [ + "phf_shared", +] + +[[package]] +name = "phf_codegen" +version = "0.11.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "aef8048c789fa5e851558d709946d6d79a8ff88c0440c587967f8e94bfb1216a" +dependencies = [ + "phf_generator", + "phf_shared", +] + +[[package]] +name = "phf_generator" +version = "0.11.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3c80231409c20246a13fddb31776fb942c38553c51e871f8cbd687a4cfb5843d" +dependencies = [ + "phf_shared", + "rand", +] + +[[package]] +name = "phf_shared" +version = "0.11.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "67eabc2ef2a60eb7faa00097bd1ffdb5bd28e62bf39990626a582201b7a754e5" +dependencies = [ + "siphasher", +] + [[package]] name = "pin-project-lite" version = "0.2.16" @@ -850,6 +969,15 @@ dependencies = [ "portable-atomic", ] +[[package]] +name = "ppv-lite86" +version = "0.2.21" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "85eae3c4ed2f50dcfe72643da4befc30deadb458a9b590d720cde2f2b1e97da9" +dependencies = [ + "zerocopy", +] + [[package]] name = "prettyplease" version = "0.2.37" @@ -862,9 +990,9 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.105" +version = "1.0.106" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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+checksum = "fd473be763f962ba62f7cd6835282e7ea1b3e56918629cc14e4a661bf089b40d" dependencies = [ "heck", + "indexmap", "proc-macro2", "quote", + "rustpython-parser", "syn", ] @@ -995,9 +1126,9 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.43" +version = "1.0.44" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dc74d9a594b72ae6656596548f56f667211f8a97b3d4c3d467150794690dc40a" +checksum = "21b2ebcf727b7760c461f091f9f0f539b77b8e87f2fd88131e7f1b433b3cece4" dependencies = [ "proc-macro2", ] @@ -1008,6 +1139,36 @@ version = "5.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f" +[[package]] +name = "rand" +version = "0.8.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404" +dependencies = [ + "libc", + "rand_chacha", + "rand_core", +] + +[[package]] +name = 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+checksum = "0b07221e68897210270a38bde4babb655869637af0f69407f96053a34f76494d" +dependencies = [ + "unic-char-property", + "unic-char-range", + "unic-ucd-version", +] + +[[package]] +name = "unic-ucd-ident" +version = "0.9.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e230a37c0381caa9219d67cf063aa3a375ffed5bf541a452db16e744bdab6987" +dependencies = [ + "unic-char-property", + "unic-char-range", + "unic-ucd-version", +] + +[[package]] +name = "unic-ucd-version" +version = "0.9.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "96bd2f2237fe450fcd0a1d2f5f4e91711124f7857ba2e964247776ebeeb7b0c4" +dependencies = [ + "unic-common", +] [[package]] name = "unicode-ident" @@ -1213,6 +1508,34 @@ version = "1.0.22" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9312f7c4f6ff9069b165498234ce8be658059c6728633667c526e27dc2cf1df5" +[[package]] +name = "unicode-width" +version = "0.2.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b4ac048d71ede7ee76d585517add45da530660ef4390e49b098733c6e897f254" + +[[package]] +name = "unicode_names2" +version = "1.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d1673eca9782c84de5f81b82e4109dcfb3611c8ba0d52930ec4a9478f547b2dd" +dependencies = [ + "phf", + "unicode_names2_generator", +] + +[[package]] +name = "unicode_names2_generator" +version = "1.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b91e5b84611016120197efd7dc93ef76774f4e084cd73c9fb3ea4a86c570c56e" +dependencies = [ + "getopts", + "log", + "phf_codegen", + "rand", +] + [[package]] name = "unindent" version = "0.2.4" @@ -1225,20 +1548,26 @@ version = "1.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7ba6f5989077681266825251a52748b8c1d8a4ad098cc37e440103d0ea717fc0" +[[package]] +name = "wasi" +version = "0.11.1+wasi-snapshot-preview1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ccf3ec651a847eb01de73ccad15eb7d99f80485de043efb2f370cd654f4ea44b" + [[package]] name = "wasip2" -version = "1.0.1+wasi-0.2.4" +version = "1.0.2+wasi-0.2.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0562428422c63773dad2c345a1882263bbf4d65cf3f42e90921f787ef5ad58e7" +checksum = "9517f9239f02c069db75e65f174b3da828fe5f5b945c4dd26bd25d89c03ebcf5" dependencies = [ "wit-bindgen", ] [[package]] name = "wasm-bindgen" -version = "0.2.106" +version = "0.2.108" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0d759f433fa64a2d763d1340820e46e111a7a5ab75f993d1852d70b03dbb80fd" +checksum = "64024a30ec1e37399cf85a7ffefebdb72205ca1c972291c51512360d90bd8566" dependencies = [ "cfg-if", "once_cell", @@ -1249,11 +1578,12 @@ dependencies = [ [[package]] name = "wasm-bindgen-futures" -version = "0.4.56" +version = "0.4.58" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "836d9622d604feee9e5de25ac10e3ea5f2d65b41eac0d9ce72eb5deae707ce7c" +checksum = "70a6e77fd0ae8029c9ea0063f87c46fde723e7d887703d74ad2616d792e51e6f" dependencies = [ "cfg-if", + "futures-util", "js-sys", "once_cell", "wasm-bindgen", @@ -1262,9 +1592,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro" -version = "0.2.106" +version = "0.2.108" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "48cb0d2638f8baedbc542ed444afc0644a29166f1595371af4fecf8ce1e7eeb3" +checksum = "008b239d9c740232e71bd39e8ef6429d27097518b6b30bdf9086833bd5b6d608" dependencies = [ "quote", "wasm-bindgen-macro-support", @@ -1272,9 +1602,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro-support" -version = "0.2.106" +version = "0.2.108" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cefb59d5cd5f92d9dcf80e4683949f15ca4b511f4ac0a6e14d4e1ac60c6ecd40" +checksum = "5256bae2d58f54820e6490f9839c49780dff84c65aeab9e772f15d5f0e913a55" dependencies = [ "bumpalo", "proc-macro2", @@ -1285,18 +1615,18 @@ dependencies = [ [[package]] name = "wasm-bindgen-shared" -version = "0.2.106" +version = "0.2.108" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cbc538057e648b67f72a982e708d485b2efa771e1ac05fec311f9f63e5800db4" +checksum = "1f01b580c9ac74c8d8f0c0e4afb04eeef2acf145458e52c03845ee9cd23e3d12" dependencies = [ "unicode-ident", ] [[package]] name = "web-sys" -version = "0.3.83" +version = "0.3.85" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9b32828d774c412041098d182a8b38b16ea816958e07cf40eec2bc080ae137ac" +checksum = "312e32e551d92129218ea9a2452120f4aabc03529ef03e4d0d82fb2780608598" dependencies = [ "js-sys", "wasm-bindgen", @@ -1375,12 +1705,29 @@ name = "winnow" version = "0.7.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5a5364e9d77fcdeeaa6062ced926ee3381faa2ee02d3eb83a5c27a8825540829" + +[[package]] +name = "wit-bindgen" +version = "0.51.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d7249219f66ced02969388cf2bb044a09756a083d0fab1e566056b04d9fbcaa5" + +[[package]] +name = "zerocopy" +version = "0.8.34" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "71ddd76bcebeed25db614f82bf31a9f4222d3fbba300e6fb6c00afa26cbd4d9d" dependencies = [ - "memchr", + "zerocopy-derive", ] [[package]] -name = "wit-bindgen" -version = "0.46.0" +name = "zerocopy-derive" +version = "0.8.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f17a85883d4e6d00e8a97c586de764dabcc06133f7f1d55dce5cdc070ad7fe59" +checksum = "d8187381b52e32220d50b255276aa16a084ec0a9017a0ca2152a1f55c539758d" +dependencies = [ + "proc-macro2", + "quote", + "syn", +] diff --git a/Cargo.toml b/Cargo.toml index db433c2d..49e0d5e4 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -17,15 +17,15 @@ path = "src/bin/stub_gen.rs" doc = true [dependencies] -pyo3 = { version = "0.27", features = ["abi3-py39", "experimental-async"] } +pyo3 = { version = "0.27", features = ["abi3-py310", "experimental-async"] } pyo3-async-runtimes = { version = "0.27", features = ["async-std-runtime"] } -pyo3-stub-gen = "0.12" +pyo3-stub-gen = "0.18" async-lock = "3.4.2" numpy = "0.27" num-traits = "0.2" delegate = "0.13" omfiles-rs = { git = "https://github.com/open-meteo/rust-omfiles", rev = "a96adaf2c0808821452eaa5e54ea5032d5834184", package = "omfiles", features = ["metadata-tree"] } om-file-format-sys = { git = "https://github.com/open-meteo/om-file-format", rev = "9feec4b8f01fee2843ddb940ddc4dd92b2981437" } -thiserror = "2.0.17" +thiserror = "2.0.18" [features] diff --git a/pyproject.toml b/pyproject.toml index 04bae999..431bddff 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,7 +5,7 @@ build-backend = "maturin" [project] name = "omfiles" description = "Python bindings for the Open-Meteo file format" -requires-python = ">=3.9" +requires-python = ">=3.10" classifiers = [ "Programming Language :: Rust", "Programming Language :: Python :: Implementation :: CPython", @@ -67,10 +67,14 @@ dev = [ ] [tool.maturin] -python-source = "python" # Python source code is in the `python` directory features = ["pyo3/extension-module"] # Define extension module in pyproject.toml instead of Cargo.toml to not mess with `cargo test` +python-source = "python" # Python source code is in the `python` directory +module-name = "omfiles._rust" sdist-include = ["LICENSE", "README.md"] +[tool.pyo3-stub-gen] +module = "_rust" + [tool.uv] # Rebuild package when any rust files change cache-keys = [{file = "pyproject.toml"}, {file = "rust/Cargo.toml"}, {file = "**/*.rs"}] diff --git a/python/omfiles/__init__.py b/python/omfiles/__init__.py index f2338e84..42f492c0 100644 --- a/python/omfiles/__init__.py +++ b/python/omfiles/__init__.py @@ -1,7 +1,7 @@ """Provides classes and utilities for reading, writing, and manipulating OM files.""" from . import types -from .omfiles import OmFileReader, OmFileReaderAsync, OmFileWriter, OmVariable, _check_cpu_features +from ._rust import OmFileReader, OmFileReaderAsync, OmFileWriter, OmVariable, _check_cpu_features _check_cpu_features() diff --git a/python/omfiles/__init__.pyi b/python/omfiles/__init__.pyi new file mode 100644 index 00000000..926b8a69 --- /dev/null +++ b/python/omfiles/__init__.pyi @@ -0,0 +1,13 @@ +# This file is automatically generated by pyo3_stub_gen +# ruff: noqa: E501, F401, F403, F405 + +from omfiles._rust import OmFileReader, OmFileReaderAsync, OmFileWriter, OmVariable + +from . import _rust + +__all__ = [ + "OmFileReader", + "OmFileReaderAsync", + "OmFileWriter", + "OmVariable", +] diff --git a/python/omfiles/omfiles.pyi b/python/omfiles/_rust/__init__.pyi similarity index 96% rename from python/omfiles/omfiles.pyi rename to python/omfiles/_rust/__init__.pyi index 3f4d64ef..5ecfff6e 100644 --- a/python/omfiles/omfiles.pyi +++ b/python/omfiles/_rust/__init__.pyi @@ -1,14 +1,23 @@ # This file is automatically generated by pyo3_stub_gen -# ruff: noqa: E501, F401 +# ruff: noqa: E501, F401, F403, F405 import builtins import typing import numpy import numpy.typing - import omfiles +from omfiles import types + +__all__ = [ + "OmFileReader", + "OmFileReaderAsync", + "OmFileWriter", + "OmVariable", + "RustPforCodec", +] +@typing.final class OmFileReader: r""" An OmFileReader class for reading .om files synchronously. @@ -199,7 +208,7 @@ class OmFileReader: OmFileReader: Child reader with the specified name if exists. """ def read_array( - self, ranges: omfiles.types.BasicSelection + self, ranges: types.BasicSelection ) -> numpy.typing.NDArray[ typing.Union[ numpy.float32, @@ -219,9 +228,9 @@ class OmFileReader: Currently only slices with step 1 are supported. - The returned array will have singleton dimensions removed (squeezed). - For example, if you index a 3D array with [1,:,2], the result will - be a 1D array since dimensions 0 and 2 have size 1. + Follows NumPy indexing semantics: + - Integer indices remove that dimension + - Slice indices (even of length 1) preserve the dimension Args: ranges (:py:data:`omfiles.types.BasicSelection`): Index expression to select data from the array. @@ -234,7 +243,7 @@ class OmFileReader: ValueError: If the requested ranges are invalid or if there's an error reading the data. """ def __getitem__( - self, ranges: omfiles.types.BasicSelection + self, ranges: types.BasicSelection ) -> numpy.typing.NDArray[ typing.Union[ numpy.float32, @@ -254,12 +263,13 @@ class OmFileReader: Read the scalar value of the variable. Returns: - object: The scalar value as a Python object (str, int, or float). + object: The scalar value as a numpy scalar or a Python string. Raises: ValueError: If the variable is not a scalar. """ +@typing.final class OmFileReaderAsync: r""" An OmFileReaderAsync class for reading .om files asynchronously. @@ -433,7 +443,7 @@ class OmFileReaderAsync: OmFileReaderAsync: Child reader with the specified name if exists. """ async def read_array( - self, ranges: omfiles.types.BasicSelection + self, ranges: types.BasicSelection ) -> numpy.typing.NDArray[ typing.Union[ numpy.float32, @@ -466,12 +476,13 @@ class OmFileReaderAsync: Read the scalar value of the variable. Returns: - object: The scalar value as a Python object (str, int, or float). + object: The scalar value as a numpy scalar or a Python string. Raises: ValueError: If the variable is not a scalar. """ +@typing.final class OmFileWriter: r""" A Python wrapper for the Rust OmFileWriter implementation. @@ -598,6 +609,7 @@ class OmFileWriter: RuntimeError: If there's an error writing to the file """ +@typing.final class OmVariable: r""" Represents a variable in an OM file. @@ -619,6 +631,7 @@ class OmVariable: """ def __repr__(self) -> builtins.str: ... +@typing.final class RustPforCodec: r""" RustPforCodec codec for compressing and decompressing integer arrays. diff --git a/src/array_index.rs b/src/array_index.rs index d13e552c..d83ac738 100644 --- a/src/array_index.rs +++ b/src/array_index.rs @@ -1,14 +1,17 @@ use pyo3::prelude::*; -use std::ops::Range; +use std::{collections::HashMap, ops::Range}; /// Type annotation support via pyo3_stub_gen impl pyo3_stub_gen::PyStubType for ArrayIndex { fn type_output() -> pyo3_stub_gen::TypeInfo { let mut import = std::collections::HashSet::new(); import.insert("omfiles".into()); + import.insert("omfiles.types".into()); pyo3_stub_gen::TypeInfo { - name: "omfiles.types.BasicSelection".into(), + name: "types.BasicSelection".into(), + source_module: None, import, + type_refs: HashMap::new(), } } } diff --git a/src/codecs.rs b/src/codecs.rs index 6d63885d..93d7fb16 100644 --- a/src/codecs.rs +++ b/src/codecs.rs @@ -29,7 +29,7 @@ fn get_dtype_size(dtype_str: &str) -> PyResult { /// /// Supports numpy arrays of dtype: int8, int16, int32, int64, uint8, uint16, uint32, uint64. #[gen_stub_pyclass] -#[pyclass(module = "omfiles.omfiles")] +#[pyclass] #[derive(Debug, Clone)] pub struct RustPforCodec {} diff --git a/src/cpu_info.rs b/src/cpu_info.rs index 1fad6bee..3f988480 100644 --- a/src/cpu_info.rs +++ b/src/cpu_info.rs @@ -1,7 +1,7 @@ use pyo3::prelude::*; use pyo3_stub_gen::derive::gen_stub_pyfunction; -#[gen_stub_pyfunction(module = "omfiles.omfiles")] +#[gen_stub_pyfunction] #[pyfunction] /// Check if the CPU has the required features for SIMD compression operations. pub fn _check_cpu_features() -> PyResult<()> { diff --git a/src/hierarchy.rs b/src/hierarchy.rs index d3c1f7ca..5e4dfd3f 100644 --- a/src/hierarchy.rs +++ b/src/hierarchy.rs @@ -3,7 +3,7 @@ use pyo3::prelude::*; use pyo3_stub_gen::derive::{gen_stub_pyclass, gen_stub_pymethods}; #[gen_stub_pyclass] -#[pyclass(module = "omfiles.omfiles")] +#[pyclass] #[derive(Clone)] /// Represents a variable in an OM file. pub(crate) struct OmVariable { diff --git a/src/lib.rs b/src/lib.rs index 1017e5ac..637ffdc9 100644 --- a/src/lib.rs +++ b/src/lib.rs @@ -15,7 +15,7 @@ mod typed_array; mod writer; #[pymodule(gil_used = false)] -fn omfiles<'py>(m: &Bound<'py, PyModule>) -> PyResult<()> { +fn _rust(m: &Bound) -> PyResult<()> { m.add_class::()?; m.add_class::()?; m.add_class::()?; @@ -26,4 +26,14 @@ fn omfiles<'py>(m: &Bound<'py, PyModule>) -> PyResult<()> { Ok(()) } +// Specific items re-export from omfiles._rust to omfiles +// This will add the explicitly mentioned classes to pyi exports for omfiles +pyo3_stub_gen::reexport_module_members!( + "omfiles", + "omfiles._rust", + "OmFileReader", + "OmFileReaderAsync", + "OmFileWriter", + "OmVariable" +); define_stub_info_gatherer!(stub_info); diff --git a/src/reader.rs b/src/reader.rs index 733fd496..b2c19346 100644 --- a/src/reader.rs +++ b/src/reader.rs @@ -42,7 +42,7 @@ use std::{ /// what the dimensions represent in advance or you need to explicitly encode them as /// some kind of attribute. #[gen_stub_pyclass] -#[pyclass(module = "omfiles.omfiles")] +#[pyclass] pub struct OmFileReader { /// The reader is stored in an Option to be able to properly close it, /// particularly when working with memory-mapped files. diff --git a/src/reader_async.rs b/src/reader_async.rs index d3eefeae..73ae766a 100644 --- a/src/reader_async.rs +++ b/src/reader_async.rs @@ -37,7 +37,7 @@ use std::{fs::File, ops::Range, sync::Arc}; /// what the dimensions represent in advance or you need to explicitly encode them as /// some kind of attribute. #[gen_stub_pyclass] -#[pyclass(module = "omfiles.omfiles")] +#[pyclass] pub struct OmFileReaderAsync { /// The reader is stored in an Option to be able to properly close it, /// particularly when working with memory-mapped files. diff --git a/src/typed_array.rs b/src/typed_array.rs index 6478cfa9..9f4e04d7 100644 --- a/src/typed_array.rs +++ b/src/typed_array.rs @@ -1,3 +1,5 @@ +use std::collections::HashMap; + use numpy::{ndarray::ArrayD, IntoPyArray}; use pyo3::prelude::*; @@ -8,7 +10,9 @@ impl pyo3_stub_gen::PyStubType for OmFileTypedArray { import.insert("numpy.typing".into()); pyo3_stub_gen::TypeInfo { name: "numpy.typing.NDArray[typing.Union[numpy.float32, numpy.float64, numpy.int32, numpy.int64, numpy.uint32, numpy.uint64, numpy.int8, numpy.uint8, numpy.int16, numpy.uint16]]".into(), + source_module: None, import, + type_refs: HashMap::new() } } } diff --git a/src/writer.rs b/src/writer.rs index a55a5ccb..37ba1606 100644 --- a/src/writer.rs +++ b/src/writer.rs @@ -24,7 +24,7 @@ use std::{ /// A Python wrapper for the Rust OmFileWriter implementation. #[gen_stub_pyclass] -#[pyclass(module = "omfiles.omfiles")] +#[pyclass] pub struct OmFileWriter { writer: Mutex>>, } diff --git a/uv.lock b/uv.lock index ef5f7fe1..8cd65f37 100644 --- a/uv.lock +++ b/uv.lock @@ -1,11 +1,10 @@ version = 1 revision = 3 -requires-python = ">=3.9" +requires-python = ">=3.10" resolution-markers = [ "python_full_version >= '3.12'", "python_full_version == '3.11.*'", - 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- name: Python 3.9 - runner: ubuntu-24.04 - platform-name: linux-x86_64 - python-version: "3.9" - is-min-deps: false - - name: Python 3.10 runner: ubuntu-24.04 platform-name: linux-x86_64 @@ -268,7 +262,7 @@ jobs: - name: Min Dependencies runner: ubuntu-24.04 platform-name: linux-x86_64 - python-version: "3.9" + python-version: "3.10" is-min-deps: true steps: # Use the test composite action diff --git a/README.md b/README.md index 7e50fc1b..874a94d4 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # Python Bindings for Open Meteo File Format -[![Python 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14](https://img.shields.io/badge/python-3.9%20%7C%203.10%20%7C%203.11%20%7C%203.12%20%7C%203.13%20%7C%203.14-blue.svg)](https://www.python.org/downloads/) +[![Python 3.10 | 3.11 | 3.12 | 3.13 | 3.14](https://img.shields.io/badge/python-3.10%20%7C%203.11%20%7C%203.12%20%7C%203.13%20%7C%203.14-blue.svg)](https://www.python.org/downloads/) [![PyPI version](https://badge.fury.io/py/omfiles.svg)](https://pypi.org/project/omfiles/) [![Build and Test](https://github.com/open-meteo/python-omfiles/actions/workflows/build-test.yml/badge.svg)](https://github.com/open-meteo/python-omfiles/actions/workflows/build-test.yml) From f9f1aa6c20303d396a9f3be91afe6d23fead8c06 Mon Sep 17 00:00:00 2001 From: terraputix Date: Mon, 26 Jan 2026 17:29:38 +0100 Subject: [PATCH 3/5] fix tests --- python/omfiles/_numcodecs.py | 2 +- python/omfiles/_zarr3.py | 2 +- python/omfiles/xarray.py | 2 +- tests/conftest.py | 2 +- tests/test_meta.py | 1 - tests/test_xarray.py | 6 +++--- 6 files changed, 7 insertions(+), 8 deletions(-) diff --git a/python/omfiles/_numcodecs.py b/python/omfiles/_numcodecs.py index 676e55d3..38899500 100644 --- a/python/omfiles/_numcodecs.py +++ b/python/omfiles/_numcodecs.py @@ -11,7 +11,7 @@ ) from e import numpy as np -from .omfiles import RustPforCodec +from ._rust import RustPforCodec @dataclass diff --git a/python/omfiles/_zarr3.py b/python/omfiles/_zarr3.py index a6d9345b..cc305839 100644 --- a/python/omfiles/_zarr3.py +++ b/python/omfiles/_zarr3.py @@ -30,7 +30,7 @@ from zarr.core.chunk_grids import ChunkGrid from zarr.core.common import JSON, BytesLike, ChunkCoords -from .omfiles import RustPforCodec +from ._rust import RustPforCodec def _from_zarr_dtype(dtype: Any) -> np.dtype: diff --git a/python/omfiles/xarray.py b/python/omfiles/xarray.py index 9bee3eef..4bcfb437 100644 --- a/python/omfiles/xarray.py +++ b/python/omfiles/xarray.py @@ -21,7 +21,7 @@ from xarray.core.utils import FrozenDict from xarray.core.variable import Variable -from .omfiles import OmFileReader, OmVariable +from ._rust import OmFileReader, OmVariable # need some special secret attributes to tell us the dimensions DIMENSION_KEY = "_ARRAY_DIMENSIONS" diff --git a/tests/conftest.py b/tests/conftest.py index b7b222ba..fc984eb1 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -4,8 +4,8 @@ import numpy as np import numpy.typing as npt import pytest +from omfiles import OmFileWriter from omfiles.meta import OmChunksMeta -from omfiles.omfiles import OmFileWriter from .test_utils import create_test_om_file diff --git a/tests/test_meta.py b/tests/test_meta.py index 55488438..dadc3961 100644 --- a/tests/test_meta.py +++ b/tests/test_meta.py @@ -1,5 +1,4 @@ import numpy as np -import pytest from omfiles.meta import OmChunksMeta diff --git a/tests/test_xarray.py b/tests/test_xarray.py index be8dba42..85f66fdb 100644 --- a/tests/test_xarray.py +++ b/tests/test_xarray.py @@ -1,8 +1,8 @@ import numpy as np -import omfiles.omfiles as om import omfiles.xarray as om_xarray import pytest import xarray as xr +from omfiles import OmFileReader, OmFileWriter from xarray.core import indexing from .test_utils import create_test_om_file, filter_numpy_size_warning @@ -16,7 +16,7 @@ def test_om_backend_xarray_dtype(dtype, empty_temp_om_file): create_test_om_file(empty_temp_om_file, shape=(5, 5), dtype=dtype) - reader = om.OmFileReader(empty_temp_om_file) + reader = OmFileReader(empty_temp_om_file) backend_array = om_xarray.OmBackendArray(reader=reader) assert isinstance(backend_array.dtype, np.dtype) @@ -57,7 +57,7 @@ def test_xarray_hierarchical_file(empty_temp_om_file): precipitation_data = np.random.rand(5, 5, 10).astype(np.float32) # Write hierarchical structure - writer = om.OmFileWriter(empty_temp_om_file) + writer = OmFileWriter(empty_temp_om_file) # dimensionality metadata temperature_dimension_var = writer.write_scalar("LATITUDE,LONGITUDE,ALTITUDE,TIME", name="_ARRAY_DIMENSIONS") From 309cc6540d3efe9769741f667608e65d316d1dfd Mon Sep 17 00:00:00 2001 From: terraputix Date: Mon, 26 Jan 2026 17:30:38 +0100 Subject: [PATCH 4/5] remove stability notice from readme, not really needed --- README.md | 7 ------- 1 file changed, 7 deletions(-) diff --git a/README.md b/README.md index 874a94d4..089614fe 100644 --- a/README.md +++ b/README.md @@ -30,13 +30,6 @@ We provide pre-built wheels for the following platforms: - macOS x86_64 (`macosx_10_12_x86_64`) - macOS ARM64 (`macosx_11_0_arm64`) -### Stability Notice - -**This project is now stable as of version 1.0.0.** -The public API is considered stable and will follow [semantic versioning](https://semver.org/). -Breaking changes will not be introduced in 1.x releases without a major version bump. - - ## Reading ### Reading Files without Hierarchy From 4580207e8585ae36d28fc75ebbbfd336b264b3fb Mon Sep 17 00:00:00 2001 From: terraputix Date: Mon, 26 Jan 2026 17:49:07 +0100 Subject: [PATCH 5/5] pyproj version needs to be higher --- pyproject.toml | 2 +- uv.lock | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 431bddff..c43f42bf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -44,7 +44,7 @@ all = [ "xarray>=2023.1.0", "fsspec>=2023.10.0", "s3fs>=2023.1.0", - "pyproj>=3.1.0" + "pyproj>=3.3.0" ] [dependency-groups] diff --git a/uv.lock b/uv.lock index 8cd65f37..e9a49bcf 100644 --- a/uv.lock +++ b/uv.lock @@ -1188,7 +1188,7 @@ requires-dist = [ { name = "numcodecs", marker = "extra == 'all'", specifier = ">=0.12.1" }, { name = "numcodecs", marker = "extra == 'codec'", specifier = ">=0.12.1" }, { name = "numpy", specifier = ">=1.21.0" }, - 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