I have a problem using your library on my dataset (attached). As I am using the settings for non-cleavable crosslinkers I would expect the upper half of the intensity matrix to be empty. However, this is not the case. Also I could not plot the spectra, as I got ValueError: could not broadcast input array from shape (2,0) into shape (2,4).
I used the code from the examples:
predictions=pDeepXL.predict.predict_batch("data/tmp/pDeepXL/input.csv", True)
pDeepXL.predict.save_result_batch('data/tmp/pDeepXL/output.csv', predictions)
pDeepXL.plot.plot_batch('data/tmp/pDeepXL/output.csv', 'data/tmp/pDeepXL/output-images')
input.csv
I have a problem using your library on my dataset (attached). As I am using the settings for non-cleavable crosslinkers I would expect the upper half of the intensity matrix to be empty. However, this is not the case. Also I could not plot the spectra, as I got
ValueError: could not broadcast input array from shape (2,0) into shape (2,4).I used the code from the examples:
input.csv