FDR Computation

[lutfia95]

Dear Authors,

Thank you very much for providing this tool. Is there any documentation on how the FDR computation is performed? I am interested in understanding that part of pLink3.

Best, AL

[NorthblueM]

Dear AL,

Thank for your interest in pLink3.

To achieve more accurate identification results, the FDR control in pLink3 is divided into multiple steps, including confidence grouping, high-level merging, the traditional target-decoy approach, and post-filtering, among others.

Unfortunately, we do not have existing documentation available right now. However, we are currently preparing documentation regarding these details, which should be made public in the near future.

Best Regards,
Pengzhi