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NAMESPACE
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69 lines (68 loc) · 2.06 KB
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# Generated by roxygen2: do not edit by hand
S3method(classify_cliques,default)
S3method(classify_cliques,rcomplex)
S3method(classify_hub_conservation,default)
S3method(classify_hub_conservation,rcomplex)
S3method(clique_intensity_test,default)
S3method(clique_intensity_test,rcomplex)
S3method(clique_perturbation_test,default)
S3method(clique_perturbation_test,rcomplex)
S3method(clique_stability,default)
S3method(clique_stability,rcomplex)
S3method(compare_modules_paired,default)
S3method(compare_modules_paired,rcomplex)
S3method(density_sweep,default)
S3method(density_sweep,rcomplex)
S3method(detect_modules,default)
S3method(detect_modules,rcomplex)
S3method(find_cliques,default)
S3method(find_cliques,rcomplex)
S3method(find_coexpressologs,default)
S3method(find_coexpressologs,rcomplex)
S3method(identify_module_hubs,default)
S3method(identify_module_hubs,rcomplex)
S3method(print,rcomplex)
S3method(print,summary.rcomplex)
S3method(summary,rcomplex)
export(characterize_hubs)
export(classify_cliques)
export(classify_hub_conservation)
export(classify_modules)
export(clique_intensity_test)
export(clique_persistence)
export(clique_perturbation_test)
export(clique_stability)
export(clique_threshold_sweep)
export(coarsen_modules)
export(compare_modules)
export(compare_modules_paired)
export(compare_neighborhoods)
export(comparison_to_edges)
export(compute_network)
export(density_sweep)
export(detect_modules)
export(extract_orthologs)
export(find_cliques)
export(find_coexpressologs)
export(get_coexpressed_hogs)
export(identify_module_hubs)
export(parse_orthologs)
export(permutation_hog_test)
export(prepare_orthologs)
export(rcomplex)
export(reduce_orthogroups)
export(run_pairwise_comparisons)
export(summarize_comparison)
export(tag_permutation)
exportMethods(compute_network)
importFrom(Rcpp,sourceCpp)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(rlang,.data)
importFrom(rlang,.env)
importFrom(stats,setNames)
importFrom(utils,modifyList)
importFrom(utils,read.delim)
useDynLib(rcomplex, .registration = TRUE)