Software updates available - 05/01/2026 #49
Description
The software updates check has detected available updates.
Please review the following report and update the software versions as needed:
Updates available
| Name | Source | Current Version | Latest Version | Date |
|---|---|---|---|---|
| abyss | GitHub | 2.1.0 | 2.3.10 | 2024-10-18T20:51:04Z |
| alphafold_db | FTP | 1.0.0 | v6 | |
| auto-phylo | GitHub | 3.2.0 | v3.2.1 | 2025-04-01T06:35:59Z |
| auto-phylo-pipeliner | GitHub | 0.1.dev32 | v2.0.0 | 2025-04-03T07:15:46Z |
| autoaugustus | GitHub | 2.5.5 | v3.5.0 | 2022-09-23T17:06:14Z |
| bedtools | GitHub | 2.31.0 | v2.31.1 | 2023-11-07T23:23:24Z |
| bioconvert | GitHub | 0.4.3 | v1.1.1 | 2023-07-17T20:13:48Z |
| biopython | GitHub | 1.78 | biopython-186 | 2025-10-28T21:15:53Z |
| bowtie1 | GitHub | 1.2.3 | v1.3.1 | 2021-09-14T01:38:24Z |
| bwa | GitHub | 0.7.17 | v0.7.19 | 2025-03-22T18:55:09Z |
| ccp4 | CCP4 | 7.0.1 | 9.0.012 | 16/12/2025 |
| cutadapt | GitHub | 1.16 | v5.2 | 2025-10-23T10:56:59Z |
| diamond | GitHub | 2.1.8 | v2.1.17 | 2025-12-21T12:04:49Z |
| dnasp-v6 | DNAsp | v6 | 6.12.03 | February 26, 2019 |
| docker | Docker | 29.0.1 | 29.1.3 | 2025-12-12 |
| entrez-direct | FTP | 10.0.20180927 | 24.7.20250910 | |
| fasttree | GitHub | 2.1.10 | v2.2.0 | 2025-06-02T17:22:35Z |
| feature-counts | Bioconductor | 2.0.0 | 2.24.0 | |
| figtree | GitHub | 1.4.4 | v1.4.5pre | 2024-02-23T08:31:03Z |
| flash | SourceForge | 1.2.11 | /FLASH-1.2.11.tar.gz | 2014-08-04 23:36:58 |
| format_auto-pss-genome | GitHub | 1.0.0 | v1.12.0 | 2024-09-19T09:10:30Z |
| freebayes | GitHub | 1.3.6 | v1.3.10 | 2025-05-31T07:44:14Z |
| gatk-4 | GitHub | 4.1.4.1 | 4.6.2.0 | 2025-04-13T17:06:55Z |
| gmap-gsnap | GMAP | 2021.03.08 | 2025-07-31 | 2025-07-31 |
| goalign | GitHub | 0.3.5 | v0.4.0 | 2025-12-11T20:18:40Z |
| gotree | GitHub | 0.4.2 | v0.5.1 | 2025-12-11T20:32:00Z |
| graphviz | GitLab | 2.43.0 | 14.1.1 | 2025-12-13T19:25:47.000+00:00 |
| haddock-tools | GitHub | 07.06.2021 | 3.0.0 | 2021-06-07T10:31:49Z |
| haplogrep | GitHub | 3.2.1 | v3.2.2 | 2024-06-06T11:54:13Z |
| hisat2 | GitHub | 2.2.0 | hisat-3n-20201216 | 2020-12-16T21:03:07Z |
| hyphy | GitHub | 2.3.14 | 2.5.93 | 2025-12-23T19:21:54Z |
| igv | GitHub | 2.13.0 | v2.19.7 | 2025-10-24T22:25:09Z |
| kakscalculator | SourceForge | 2.0 | /KaKs_Calculator2.0.rar | 2010-06-27 03:23:33 |
| mafft | GitLab | 7.505 | v7.526 | 2024-04-26T13:37:45.000+09:00 |
| mauve | GitHub | 2.4.0 | v2.4.1 | 2020-11-15T04:08:01Z |
| maxbin2 | SourceForge | 2.2.4 | /MaxBin-2.2.7.tar.gz | 2020-06-12 09:32:20 |
| metaeuk | GitHub | 41.0.0 | 7-bba0d80 | 2024-05-30T08:16:11Z |
| multiqc | GitHub | 1.14.0 | v1.33 | 2025-12-09T16:02:16Z |
| muscle | GitHub | 3.8.31 | v5.3 | 2024-11-11T00:59:52Z |
| ncbi-datasets | GitHub | 18.7.0 | v18.13.0 | 2025-12-12T16:24:50Z |
| omegamap | GitHub | 2019.06.08 | git.v1.0 | 2018-04-13T16:26:07Z |
| paml | GitHub | 4.9j | releases-prior-to-v4.10 | 2025-12-12T16:32:19Z |
| pathvisio | GitHub | 3.3.0 | 3.4.0-alpha | 2024-10-03T12:41:07Z |
| pdb-tools | GitHub | 2.4.1 | v2.5.2 | 2025-07-17T15:56:51Z |
| picard | GitHub | 2.21.5 | 3.4.0 | 2025-04-13T15:34:59Z |
| popart | GitHub | 1.7 | 1.7.1b | 2015-03-08T00:34:47Z |
| prokka | GitHub | 1.14.6 | v1.15.6 | 2025-12-14T04:39:38Z |
| pymol | GitHub | 2.3.0 | v3.1.0 | 2025-01-25T04:19:47Z |
| qualimap | Bitbucket | 2.2.1 | 2.3 | May 19, 2023 |
| r_deseq2 | Bioconductor | 1.32.0_v2 | 1.50.2 | |
| r_edger | Bioconductor | 4.0.16 | 4.8.2 | |
| r_enhanced-volcano | Bioconductor | 1.12.0 | 1.28.2 | |
| r_pathfindr | GitHub | 2.4.2 | v2.7.0 | 2025-12-22T15:34:24Z |
| r_project | R Project | 4.3.3 | 4.5.2 | 2025-10-31 |
| r_sva | Bioconductor | 3.54.0 | 3.58.0 | |
| raxml | GitHub | 8.2.12 | v8.2.13 | 2023-10-04T07:33:55Z |
| roary | GitHub | 3.6.0 | v3.13.0 | 2019-11-06T10:55:40Z |
| rootdigger | GitHub | 1.7.0 | v1.8.0 | 2022-08-20T17:11:20Z |
| samtools_bcftools | GitHub | 1.22 | 1.23 | 2025-12-16T09:18:01Z |
| scipio | Scipio | 1.4 | 1.4.1 | 2013-05-24 |
| seqtk | GitHub | 1.4 | v1.5 | 2025-06-01T19:24:24Z |
| soapdenovo2 | GitHub | 2.0.4 | r242 | 2018-05-14T01:58:24Z |
| spades | GitHub | 3.11.1 | continuous | 2025-08-01T05:50:04Z |
| splitstree | GitHub | 6.4.11 | v6.5.1 | 2025-07-30T11:30:05Z |
| sratoolkit | GitHub | 3.1.0 | 3.3.0 | 2025-12-08T19:25:06Z |
| takeabreak | GitHub | 1.0.0 | v1.1.2 | 2016-05-23T09:39:15Z |
| tcoffee | GitHub | 12.0.7 | Version_13.46.2.7c9e712d | 2025-10-02T10:49:40Z |
| tm-align_server | GitHub | 1.0.0 | 20190426 | 2019-08-01T00:44:50Z |
| trinity | GitHub | 2.11.0 | Trinity-v2.15.2 | 2024-07-31T19:09:46Z |
| vcftools | GitHub | 0.1.16 | v0.1.17 | 2025-05-15T00:30:54Z |
| velvet | GitHub | 1.1 | v1.2.10 | 2014-08-15T16:13:23Z |
| whiscy | GitHub | 18.05.2019 | v1.2.1 | 2024-06-27T09:14:43Z |