ProjectDefinitions.py

import os
import sys

#do a bunch of prints to ensure things are working, it is very verbose
DEBUG = False

data_directory = os.path.abspath("../../Data/Cache") + "/"
fastadir = data_directory + "fasta/"
blastpdir = data_directory + "blastp/"
deltablastdir = data_directory + "deltablast/"

drugbankdir = data_directory + "drugbank/"
drugbankinfo = drugbankdir + "all_target_ids_all.csv"
drugbank_db_name = "drugbank.sqlite"

results_directory = os.path.abspath("../../Data/Results") + "/"
final_result_csv = os.path.abspath("../../Data/Results") + "/drugbank_to_yeast_results.csv"

def makeDirsIfNecessary(Directory):
    if not os.path.exists(Directory):
        if DEBUG:
            sys.stdout.write("INFO: cache directory '" + Directory + "' was not found, creating... ")
        os.makedirs(Directory)

def make_directory_structure():
    makeDirsIfNecessary(data_directory)
    makeDirsIfNecessary(fastadir)
    makeDirsIfNecessary(blastpdir)
    makeDirsIfNecessary(deltablastdir)
    makeDirsIfNecessary(drugbankdir)
    makeDirsIfNecessary(results_directory)