From b08488c7bd2c77698f3cc77fdf2db1bda3d19952 Mon Sep 17 00:00:00 2001
From: Joe Thorley <joe@poissonconsulting.ca>
Date: Mon, 22 Jun 2026 15:52:08 -0700
Subject: [PATCH] Standardize CI via reusable workflows (tier: unimportant)

Replace ad hoc workflows with thin callers to the reusable CI in
poissonconsulting/.github (R-CMD-check, test-coverage, pkgdown),
keeping the fledge callers.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
---
 .github/workflows/R-CMD-check.yaml   | 32 ++++++-----------
 .github/workflows/pkgdown.yaml       | 45 ++++-------------------
 .github/workflows/test-coverage.yaml | 53 +++++-----------------------
 3 files changed, 26 insertions(+), 104 deletions(-)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index 57589a5..0458c80 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -1,29 +1,17 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+name: R-CMD-check
 on:
   push:
     branches: [main, master]
   pull_request:
     branches: [main, master]
-
-name: R-CMD-check
-
+permissions:
+  contents: read
 jobs:
   R-CMD-check:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      R_KEEP_PKG_SOURCE: yes
-    steps:
-      - uses: actions/checkout@v5
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::rcmdcheck
-          needs: check
-
-      - uses: r-lib/actions/check-r-package@v2
+    uses: poissonconsulting/.github/.github/workflows/R-CMD-check.yaml@v1
+    with:
+      tier: unimportant
+      jags: false
+      tex: false
+      private: false
+    secrets: inherit
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
index 3603cd3..78fd5be 100644
--- a/.github/workflows/pkgdown.yaml
+++ b/.github/workflows/pkgdown.yaml
@@ -1,5 +1,4 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+name: pkgdown
 on:
   push:
     branches: [main, master]
@@ -8,41 +7,11 @@ on:
   release:
     types: [published]
   workflow_dispatch:
-
-name: pkgdown
-
+permissions:
+  contents: write
 jobs:
   pkgdown:
-    runs-on: ubuntu-latest
-    # Only restrict concurrency for non-PR jobs
-    concurrency:
-      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-    permissions:
-      contents: write
-    steps:
-      - uses: actions/checkout@v5
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::pkgdown, local::.
-          needs: website
-
-      - name: Build site
-        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
-        shell: Rscript {0}
-
-      - name: Deploy to GitHub pages 🚀
-        if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@v4.7.3
-        with:
-          clean: false
-          branch: gh-pages
-          folder: docs
+    uses: poissonconsulting/.github/.github/workflows/pkgdown.yaml@v1
+    with:
+      private: false
+    secrets: inherit
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index bd8a338..dac8c3d 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -1,50 +1,15 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+name: test-coverage
 on:
   push:
     branches: [main, master]
   pull_request:
     branches: [main, master]
-
-name: coverage
-
+permissions:
+  contents: read
 jobs:
-  coverage:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
-    steps:
-      - uses: actions/checkout@v5
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::covr
-          needs: coverage
-
-      - name: Test coverage
-        run: |
-          covr::codecov(
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
-          )
-        shell: Rscript {0}
-
-      - name: Show testthat output
-        if: always()
-        run: |
-          ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v4
-        with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package
+  test-coverage:
+    uses: poissonconsulting/.github/.github/workflows/test-coverage.yaml@v1
+    with:
+      tex: false
+      private: false
+    secrets: inherit