Prepare_variants.py supports VCF but not project_payload.py:
project_payload.py: error: argument --input-format: invalid choice: 'vcf' (choose from bfile, pfile, sumstats, sumstats-clean)
Given that the raw data handled by genomatch is in VCF and has been prepared in such, converting them now would be an extra (potentially resource heavy) step. Is it possible to enable processing of VCF data directly?
Prepare_variants.pysupports VCF but notproject_payload.py:project_payload.py: error: argument --input-format: invalid choice: 'vcf' (choose from bfile, pfile, sumstats, sumstats-clean)Given that the raw data handled by genomatch is in VCF and has been prepared in such, converting them now would be an extra (potentially resource heavy) step. Is it possible to enable processing of VCF data directly?