demonanalysis/NAMESPACE at master · robjohnnoble/demonanalysis · GitHub

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# Generated by roxygen2: do not edit by hand

export(T_grow_j)
export(add_columns)
export(add_relative_time)
export(adjust_mig_rate)
export(all_output)
export(all_statuses)
export(ancestry)
export(apply_combinations)
export(apply_combinations_parallel)
export(combine_dfs)
export(count_drivers)
export(count_parameters)
export(count_seeds)
export(create_plots_batch)
export(disp_rate)
export(disp_rate_demon)
export(disp_rate_fission)
export(disp_rate_max)
export(disp_rate_min)
export(dominant)
export(driver_geno_div_df_batch)
export(filter_by_generation_or_numcells)
export(final_error_message)
export(final_generation)
export(find_correlations)
export(first_inc_moment)
export(geno_dist)
export(get_Variable_cor_summary)
export(get_Variable_cor_summary_FinalSize)
export(get_cor_summary)
export(get_summary)
export(get_tree_from_matrix)
export(get_wait_cor_summary)
export(grid_plot)
export(hist2)
export(image_df_from_grid_file)
export(inv_Simpson_index)
export(lambda)
export(lambda_invasion)
export(make_dir)
export(make_image_file_name)
export(metrics)
export(mig_rate)
export(muller_df_from_file)
export(parameter_names_and_values)
export(plot_R2_verus_sweep_metric)
export(plot_all_charts)
export(plot_all_images)
export(plot_allelecount_vs_origintime)
export(plot_corr_outcome_versus_period)
export(plot_corr_waiting_time_versus_depth)
export(plot_corr_waiting_time_versus_start_size)
export(plot_counts)
export(plot_cum_dist)
export(plot_curves_faceted)
export(plot_driver_geno_div)
export(plot_figure2)
export(plot_first_inc_moment)
export(plot_logit_freq_dist)
export(plot_mutation_waves)
export(plot_scatter_outcome_diversity)
export(plot_scatter_waiting_time_diversity)
export(plot_trajectories_by_K)
export(plot_trajectories_by_diversity)
export(plot_tree)
export(plot_viol_sweep_metric)
export(prob_successful_migration)
export(quadratic_diversity)
export(read_delim_special)
export(reflect_on_diagonal)
export(refresh_data_files)
export(rho)
export(sweep_sequence)
export(sweep_times)
export(time_expected)
export(time_fixation)
export(time_migration)
export(trans_rate)
import(RColorBrewer)
import(Rgraphviz)
import(dplyr)
import(ggmuller)
import(ggplot2)
import(lazyeval)
import(parallel)
importFrom(RVAideMemoire,spearman.ci)
importFrom(TeachingDemos,subplot)
importFrom(ape,njs)
importFrom(ape,plot.phylo)
importFrom(data.table,fread)
importFrom(data.table,rbindlist)
importFrom(dplyr,bind_cols)
importFrom(ggmuller,find_start_node)
importFrom(ggmuller,get_edges)
importFrom(ggmuller,get_population_df)
importFrom(ggmuller,move_up)
importFrom(grDevices,col2rgb)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
importFrom(graph,ftM2adjM)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,text)
importFrom(gridExtra,grid.arrange)
importFrom(moments,skewness)
importFrom(readr,read_delim)
importFrom(readr,read_lines)
importFrom(rlang,sym)
importFrom(scales,rescale)
importFrom(stats,as.dist)
importFrom(stats,cor.test)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,plogis)
importFrom(stats,qlogis)
importFrom(stats,setNames)
importFrom(stats,var)