From bbab9bb51a9c0f27ee21399bd626f53d1aaa1e8e Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 3 Aug 2026 17:58:17 +0000 Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/biomejs/pre-commit: v2.4.16 → v2.5.6](https://github.com/biomejs/pre-commit/compare/v2.4.16...v2.5.6) - [github.com/tox-dev/pyproject-fmt: v2.23.0 → v2.26.0](https://github.com/tox-dev/pyproject-fmt/compare/v2.23.0...v2.26.0) - [github.com/astral-sh/ruff-pre-commit: v0.15.15 → v0.16.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.15...v0.16.1) --- .pre-commit-config.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 598e3b612..2d4f6e5ed 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -31,15 +31,15 @@ exclude: | ) repos: - repo: https://github.com/biomejs/pre-commit - rev: v2.4.16 + rev: v2.5.6 hooks: - id: biome-format - repo: https://github.com/tox-dev/pyproject-fmt - rev: v2.23.0 + rev: v2.26.0 hooks: - id: pyproject-fmt - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.15.15 + rev: v0.16.1 hooks: - id: ruff-check types_or: [python, pyi, jupyter] From 3f32ef0494a29401199529f5bdae0c57a57843c6 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 3 Aug 2026 18:04:29 +0000 Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- gget/gget_virus.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gget/gget_virus.py b/gget/gget_virus.py index 7742e6a91..b030bcd1d 100644 --- a/gget/gget_virus.py +++ b/gget/gget_virus.py @@ -5517,7 +5517,7 @@ def merge_metadata_csvs(genbank_csv_path: str, standard_csv_path: str) -> bool: return True - except Exception as e: # noqa: BLE001 + except Exception as e: logger.warning("❌ Failed to merge metadata CSVs: %s", e) logger.debug("Exception details:", exc_info=True) return False