CatAnalysisCode/ccwrapper at master · shihchengyen/CatAnalysisCode · GitHub

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#!/bin/tcsh -f
# usage: ccwrapper #surr/set #sets filename [dirs]

# set arguments
@ surrperset = $1
@ sets = $2
set basename = $3

# get number of arguments
@ nargs = $#argv
if ( $nargs > 3 ) then
	# if there are more arguments, loop over them instead of looping over
	# directories in local directory
	set dirs = ($argv[4-$nargs])
	# get current directory
	set thisDir = `pwd`
	# set loop variables
	@ setn = 1

	while( $setn <= $sets )
		foreach i ($dirs)
			cd $i
			echo 'hostname; unset DISPLAY; cd $PBS_O_WORKDIR;'"hostname > ccout${setn}; /ccb/home/syen/matlab/Cat/bin/catCompute $surrperset ${basename}${setn} >> ccout${setn} 2>&1" | qsub -V -l nodes=1 -j oe -o $PWD/qsub${setn} -N ccompute -
			cd $thisDir
		end
		@ setn++
	end
else
    set dirs = (`ls -d [a-z][1-9]`)
	# set loop variables
	@ setn = 1

	while( $setn <= $sets )
		foreach i ($dirs)
			cd $i
			foreach j (*)
				cd $j
				foreach k (*)
					cd $k
					echo 'hostname; unset DISPLAY; cd $PBS_O_WORKDIR;'"hostname > ccout${setn}; /ccb/home/syen/matlab/Cat/bin/catCompute $surrperset ${basename}${setn} >> ccout${setn} 2>&1" | qsub -V -l nodes=1 -j oe -o $PWD/qsub${setn} -N ccompute -
					cd ..
				end
				cd ..
			end
			cd ..
		end
	end
endif