Issues

• Absorb intrinsic donor QC from the imputation plink_qc stage

  swarbricklab/genotyping#31 · Filter by author johnyaku opened on Sep 21, 2026

• Track public test data via archivefs + chirograph (follow-up to #21)

  swarbricklab/genotyping#30 · Filter by author johnyaku opened on Sep 21, 2026

• Make genotyping sample-centric (unit = array sample, not donor)

  enhancement
  swarbricklab/genotyping#27 · Filter by author johnyaku opened on Sep 20, 2026

• Harmonise with cna_profiler: adopt the full Axiom Best-Practices front-end (shared foundation)

  enhancement
  swarbricklab/genotyping#26 · Filter by author johnyaku opened on Sep 20, 2026

• Pin container images by digest; publish and verify the ctp-tools APT image

  enhancement
  swarbricklab/genotyping#16 · Filter by author johnyaku opened on Sep 17, 2026

• Make the repo citable: public visibility, licence, CITATION.cff, Zenodo DOI

  documentation
  swarbricklab/genotyping#15 · Filter by author johnyaku opened on Sep 17, 2026

• Installation script

  swarbricklab/genotyping#5 · Filter by author johnyaku opened on Feb 5, 2025