call consensus threads

[PedalheadPHX]

phoenix/modules/dna_alignment/fgbio_umi.jst

Line 230 in 3a81441

fgbio --tmp-dir {{ temp_dir }}/fgbio_tmp CallMolecularConsensusReads \

This tool looks to be running on one CPU only even with 4 assigned, there is a --threads option and it defaults to 1 so what we see with htop makes sense but maybe the threads option reduces the runtime.

threads |   | Int | The number of threads to use while consensus calling. | Optional | 1 | 1

[PedalheadPHX]

So this option is new to the v2.x fgbio releases, so for future update in tempe I suspect that become fully dynamic. Should review fulcrum recommendations before updates (https://github.com/fulcrumgenomics/fgbio/blob/main/docs/best-practice-consensus-pipeline.md)