diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 79fdfb8..9ea5e23 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -26,11 +26,18 @@ jobs: - name: Run Ruff (linting) uses: astral-sh/ruff-action@v3 + with: + version: "0.15.11" - name: Run pytest (unit tests) env: - DB_PATH: test.db - run: uv run alembic upgrade head && uv run pytest + DATABASE_ENGINE: sqlite + DATABASE_HOST: localhost + DATABASE_PORT: "5432" + DATABASE_USER: test + DATABASE_PASSWORD: test + DATABASE_DB: test + run: uv run pytest - name: Run mypy (type checking) run: uv run mypy app/ \ No newline at end of file diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 4be3b45..71ce2e7 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -12,7 +12,7 @@ repos: - id: pytest name: pytest - entry: sh -c 'DB_PATH="${DB_PATH:-test.db}" uv run pytest' + entry: uv run pytest language: system pass_filenames: false diff --git a/Dockerfile b/Dockerfile index 02b74a1..63e7385 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,7 +1,6 @@ FROM python:3.11-slim COPY --from=ghcr.io/astral-sh/uv:latest /uv /uvx /bin/ -ENV DB_PATH="database.db" WORKDIR /app diff --git a/Taskfile.yml b/Taskfile.yml index 8f6bc70..c8f8ee8 100644 --- a/Taskfile.yml +++ b/Taskfile.yml @@ -1,8 +1,5 @@ version: "3" -env: - DB_PATH: "database.db" - tasks: setup: desc: Initial project setup @@ -30,6 +27,6 @@ tasks: - "docker compose up --build" test: - desc: Run tests with separate DB + desc: Run tests locally with uv (SQLite in-memory) cmds: - - "docker compose exec backend sh -c 'DB_PATH=test.db uv run pytest -vvs'" + - "uv run pytest" \ No newline at end of file diff --git a/app/config.py b/app/config.py index 76bc07e..b732ec6 100644 --- a/app/config.py +++ b/app/config.py @@ -1,24 +1,32 @@ from pathlib import Path +from typing import Literal -from pydantic import field_validator -from pydantic_settings import BaseSettings +from pydantic import Field +from pydantic_settings import BaseSettings, SettingsConfigDict UPLOAD_DIR = Path("data") -# Used to catch missing DB_PATH. -# If this value is still set, it means DB_PATH wasn't configured. -DEFAULT_DB_PLACEHOLDER = "__MISSING_DB_PATH__" +class DatabaseSettings(BaseSettings): + model_config = SettingsConfigDict( + env_file=".env", extra="ignore" + ) -class Settings(BaseSettings): - db_path: str = DEFAULT_DB_PLACEHOLDER + database_engine: Literal["sqlite", "postgres"] = Field(default="sqlite") + database_host: str + database_port: int + database_user: str + database_password: str + database_db: str - @field_validator("db_path", mode="before") - @classmethod - def validate_db_path(cls, value): - if value == DEFAULT_DB_PLACEHOLDER: - raise ValueError("You must set DB_PATH in your environment or .env file.") - return value + @property + def database_url(self) -> str: + if self.database_engine == "sqlite": + return "sqlite:///:memory:" + return ( + f"postgresql+psycopg://{self.database_user}:{self.database_password}" + f"@{self.database_host}:{self.database_port}/{self.database_db}" + ) -settings = Settings() +settings = DatabaseSettings() diff --git a/app/database.py b/app/database.py index 20a61d9..4bcb518 100644 --- a/app/database.py +++ b/app/database.py @@ -1,8 +1,17 @@ +from sqlalchemy.pool import StaticPool from sqlmodel import create_engine from app.config import settings -connect_args = {"check_same_thread": False} -engine = create_engine( - f"sqlite:///{settings.db_path}", echo=True, connect_args=connect_args -) +if settings.database_engine == "sqlite": + engine = create_engine( + settings.database_url, + echo=True, + connect_args={"check_same_thread": False}, + poolclass=StaticPool, + ) +else: + engine = create_engine( + settings.database_url, + echo=True, + ) diff --git a/compose.yaml b/compose.yaml index 970519d..3ce7ba0 100644 --- a/compose.yaml +++ b/compose.yaml @@ -1,20 +1,37 @@ services: - database: - image: alpine:3.20 - command: sh -c "echo database started" + db: + image: postgres:17-alpine + env_file: .env + restart: always + healthcheck: + test: ["CMD-SHELL", "pg_isready -U ${DATABASE_USER} -d ${DATABASE_DB}"] + start_period: 30s + start_interval: 5s + interval: 30s + timeout: 5s + retries: 10 volumes: - - sqlite_data:/db + - pgdata:/var/lib/postgresql/data + adminer: + image: adminer + restart: always + ports: + - 8080:8080 backend: build: . + env_file: .env environment: - DB_PATH: /db/database.db + DATABASE_ENGINE: postgres + DATABASE_HOST: db + DATABASE_PORT: 5432 ports: - "8000:8000" depends_on: - - database + db: + condition: service_healthy volumes: - - sqlite_data:/db + - ./data:/app/data command: > sh -c "uv run alembic upgrade head && uv run uvicorn app.main:app --host 0.0.0.0 --port 8000 --reload" @@ -40,4 +57,4 @@ services: action: rebuild volumes: - sqlite_data: \ No newline at end of file + pgdata: diff --git a/pyproject.toml b/pyproject.toml index 1e89739..423ac71 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -8,8 +8,10 @@ dependencies = [ "alembic>=1.16.2", "fastapi[standard]>=0.115.12", "pandas>=2.2.3", + "psycopg[binary]>=3.3.4", "pyarrow>=22.0.0", "pydantic-settings>=2.8.1", + "sqlalchemy>=2.0.49", "sqlmodel>=0.0.24", "uvicorn>=0.34.0", ] @@ -29,7 +31,12 @@ dev = [ [tool.pytest.ini_options] addopts = ["-vvs"] env = [ - "DB_PATH=test.db", + "DATABASE_ENGINE=sqlite", + "DATABASE_HOST=localhost", + "DATABASE_PORT=5432", + "DATABASE_USER=test", + "DATABASE_PASSWORD=test", + "DATABASE_DB=test", ] [[tool.mypy.overrides]] @@ -37,4 +44,7 @@ module = ["pyarrow", "pyarrow.csv", "pyarrow.parquet"] ignore_missing_imports = true [tool.ruff] -exclude = [".venv", "uv.lock"] \ No newline at end of file +exclude = [".venv", "uv.lock", "alembic"] + +[tool.mypy] +plugins = ["pydantic.mypy"] \ No newline at end of file diff --git a/tests/conftest.py b/tests/conftest.py index 74941a1..d188e56 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,17 +1,21 @@ import logging -import os from pathlib import Path import pytest from fastapi.testclient import TestClient -from sqlmodel import Session, SQLModel, create_engine +from sqlmodel import Session, SQLModel +from app.config import settings +from app.database import engine from app.dependencies import get_session, get_upload_dir from app.main import app @pytest.fixture(scope="session", autouse=True) -def disable_logging(): +def test_setup(): + assert settings.database_engine == "sqlite", ( + f"Tests must use SQLite, got engine: {settings.engine}" + ) logging.disable(logging.CRITICAL) yield logging.disable(logging.NOTSET) @@ -24,17 +28,8 @@ def disable_logging(): @pytest.fixture(scope="session") def test_engine(tmp_path_factory): - db_path = tmp_path_factory.mktemp("db") / "test.db" - os.environ["DB_PATH"] = str(db_path) - engine = create_engine( - f"sqlite:///{db_path}", - connect_args={"check_same_thread": False}, - echo=False, - ) SQLModel.metadata.create_all(engine) yield engine - db_path.unlink(missing_ok=True) - @pytest.fixture def session(test_engine): diff --git a/uv.lock b/uv.lock index d8951a6..8c1ed84 100644 --- a/uv.lock +++ b/uv.lock @@ -350,8 +350,10 @@ dependencies = [ { name = "alembic" }, { name = "fastapi", extra = ["standard"] }, { name = "pandas" }, + { name = "psycopg", extra = ["binary"] }, { name = "pyarrow" }, { name = "pydantic-settings" }, + { name = "sqlalchemy" }, { name = "sqlmodel" }, { name = "uvicorn" }, ] @@ -373,8 +375,10 @@ requires-dist = [ { name = "alembic", specifier = ">=1.16.2" }, { name = "fastapi", extras = ["standard"], specifier = ">=0.115.12" }, { name = "pandas", specifier = ">=2.2.3" }, + { name = "psycopg", extras = ["binary"], specifier = ">=3.3.4" }, { name = "pyarrow", specifier = ">=22.0.0" }, { name = "pydantic-settings", specifier = ">=2.8.1" }, + { name = "sqlalchemy", specifier = ">=2.0.49" }, { name = "sqlmodel", specifier = ">=0.0.24" }, { name = "uvicorn", specifier = ">=0.34.0" }, ] @@ -1343,6 +1347,75 @@ 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