From c46866fbdf757ed80c636eceb3871b6b66592fce Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 7 Jan 2026 07:22:02 +0000
Subject: [PATCH 1/3] Initial plan


From 6ff113f8683238d3fec9f59b5798d273db2b1f5e Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 7 Jan 2026 08:21:43 +0000
Subject: [PATCH 2/3] Optimize JAGS dependencies: remove unused platform steps
 from test-coverage, add to pkgdown

Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
---
 .github/workflows/pkgdown.yaml       | 18 ++++++++++++++++++
 .github/workflows/test-coverage.yaml | 18 +-----------------
 2 files changed, 19 insertions(+), 17 deletions(-)

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
index 8eae438e..35d8b214 100644
--- a/.github/workflows/pkgdown.yaml
+++ b/.github/workflows/pkgdown.yaml
@@ -67,6 +67,11 @@ jobs:
         with:
           tinytex: true
 
+      - name: Install JAGS
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y jags
+
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
@@ -79,6 +84,19 @@ jobs:
           extra-packages: |
             local::.
             r-lib/pkgdown
+      
+      - name: Install rjags
+        run: |
+          install.packages("rjags",
+                    repos = "https://cloud.r-project.org",
+                    type = "source",
+                    verbose = TRUE)
+           withr::local_options(warn = 2)
+           library(rjags)
+           library(runjags)
+           runjags::findJAGS()
+           runjags::testjags()
+        shell: Rscript {0}
        
       # If events is a PR, set subdir to 'preview/pr<pr_number>'
       - name: "[PR] Set documentation subdirectory"
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 70242556..3cc6393e 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -16,23 +16,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - name: Install JAGS (Windows)
-        if: runner.os == 'Windows'
-        run: |
-          curl.exe -o wjags.exe -L0 -k --url https://downloads.sourceforge.net/project/mcmc-jags/JAGS/4.x/Windows/JAGS-4.3.1.exe
-          wjags.exe /S
-          del wjags.exe
-        shell: cmd
-      
-      # from https://github.com/ku-awdc/runjags/issues/2:
-      - name: Install JAGS (macOS)
-        if: runner.os == 'macOS'
-        run: |
-          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/JAGS-4.3.1.pkg -o /usr/local/JAGS-4.3.1.pkg
-          sudo installer -pkg /usr/local/JAGS-4.3.1.pkg -target /usr/local/bin/
-      
-      - name: Install JAGS (Ubuntu)
-        if: runner.os == 'Linux'
+      - name: Install JAGS
         run: |
           sudo apt-get update
           sudo apt-get install -y jags

From a6c08a0b2555a16a143d4f02a5956357266bff5e Mon Sep 17 00:00:00 2001
From: Douglas Ezra Morrison <demorrison@ucdavis.edu>
Date: Wed, 7 Jan 2026 18:39:00 -0800
Subject: [PATCH 3/3] Update pkgdown.yaml

---
 .github/workflows/pkgdown.yaml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
index 35d8b214..92ac05bc 100644
--- a/.github/workflows/pkgdown.yaml
+++ b/.github/workflows/pkgdown.yaml
@@ -6,8 +6,6 @@
 # more info: https://github.com/rstudio/education-workflows/tree/main/examples#deploy-pkgdown-to-github-pages-with-pr-previews-and-tagged-versions
 on:
   pull_request:
-    branches:
-      - main
     types:
       - opened
       - reopened