From 4d72138b7f788eb0a484880c018c95ada124e1a9 Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Fri, 7 Aug 2026 13:55:36 +1200
Subject: [PATCH 01/11] Vectorization of Plane.rrup_distance function.

---
 source_modelling/sources.py | 68 ++++++++++++++++++++++++-------------
 tests/test_sources.py       | 57 ++++++++++++++++++++-----------
 2 files changed, 82 insertions(+), 43 deletions(-)

diff --git a/source_modelling/sources.py b/source_modelling/sources.py
index 1d6b59d7..70d67967 100644
--- a/source_modelling/sources.py
+++ b/source_modelling/sources.py
@@ -792,42 +792,63 @@ def wgs_depth_coordinates_to_fault_coordinates(
             raise ValueError("Specified coordinates do not lie in plane")
         return np.clip(fault_local_coordinates, 0, 1)
 
-    def rrup_distance(self, point: np.ndarray) -> float:
+    def rrup_distance(self, points: np.ndarray) -> float:
         """Compute RRup Distance between a fault and a point.
 
         Parameters
         ----------
-        point : np.ndarray
-            The point to compute distance to (in lat, lon, depth format)
+        points : np.ndarray
+            The points to compute distance to.
+            Shape [N, 3] where N is the number of points
+                and each point is in (lat, lon, depth) format.
 
         Returns
         -------
         float
             The rrup distance (in metres) between the point and the fault geometry.
         """
-        point_nztm = coordinates.wgs_depth_to_nztm(point)
+        points_nztm = coordinates.wgs_depth_to_nztm(np.atleast_2d(points))
         frame = np.array(
             [self.bounds[1] - self.bounds[0], self.bounds[-1] - self.bounds[0]]
         )
         local_coords, _, _, _ = np.linalg.lstsq(
             frame.T,
-            point_nztm - self.bounds[0],
+            (points_nztm - self.bounds[0]).T,
             rcond=None,
         )
-        projected_point = local_coords @ frame + self.bounds[0]
-        out_of_plane_distance = np.linalg.norm(point_nztm - projected_point)
-        if np.allclose(local_coords, np.clip(local_coords, 0, 1)):
-            # solution lies in fault, ergo just return projected distance
-            return float(out_of_plane_distance)
-
-        in_plane_distance = min(
-            geo.point_to_segment_distance(
-                projected_point, self.bounds[i], self.bounds[(i + 1) % 4]
-            )
-            for i in range(4)
+        local_coords = local_coords.T
+        projected_points = local_coords @ frame + self.bounds[0]
+        out_of_plane_distance = np.linalg.norm(points_nztm - projected_points, axis=1)
+
+        projected_points_in_bounds = np.all(
+            np.isclose(local_coords, np.clip(local_coords, 0, 1)), axis=1
         )
 
-        return np.sqrt(in_plane_distance**2 + out_of_plane_distance**2)
+        rrup = np.zeros(points_nztm.shape[0])
+        if np.any(projected_points_in_bounds):
+            rrup[projected_points_in_bounds] = out_of_plane_distance[
+                projected_points_in_bounds
+            ]
+
+        if np.any(projected_points_out_bounds := ~projected_points_in_bounds):
+            in_plane_distance = np.minimum.reduce(
+                [
+                    geo.point_to_segment_distance(
+                        projected_points[projected_points_out_bounds],
+                        self.bounds[i],
+                        self.bounds[(i + 1) % 4],
+                    )
+                    for i in range(4)
+                ]
+            )
+            rrup[projected_points_out_bounds] = np.sqrt(
+                in_plane_distance**2
+                + out_of_plane_distance[projected_points_out_bounds] ** 2
+            )
+
+        if rrup.shape[0] == 1:
+            return float(rrup[0])
+        return rrup
 
     def rjb_distance(self, point: np.ndarray) -> float:
         """Return the closest projected distance between the fault and the point.
@@ -1306,21 +1327,22 @@ def geojson(self) -> str:  # numpydoc ignore=RT01
             )
         )
 
-    def rrup_distance(self, point: np.ndarray) -> float:
+    def rrup_distance(self, points: np.ndarray) -> float:
         """Compute RRup Distance between a fault and a point.
 
         Parameters
         ----------
-        point : np.ndarray
-            The point to compute distance to (in lat, lon, depth format)
+        points : np.ndarray
+            The points to compute distance.
+            Shape [N, 3] where N is the number of points
+                and each point is in (lat, lon, depth) format.
 
         Returns
         -------
         float
-            The rrup distance (in metres) between the point and the fault geometry.
+            The rrup distances (in metres) between the points and the fault geometry.
         """
-
-        return min(plane.rrup_distance(point) for plane in self.planes)
+        return np.min([plane.rrup_distance(points) for plane in self.planes])
 
     def fault_coordinates_to_wgs_depth_coordinates(
         self, fault_coordinates: np.ndarray
diff --git a/tests/test_sources.py b/tests/test_sources.py
index 7f7baf1a..7b99ef0c 100644
--- a/tests/test_sources.py
+++ b/tests/test_sources.py
@@ -684,35 +684,49 @@ def test_from_centroid_strike_dip_dtop_dbottom_derivation(
 
 @given(
     plane=fault_plane,
-    point=st.builds(
-        coordinate,
-        lat=st.floats(-50, -31),
-        lon=st.floats(160, 180),
-        depth=st.floats(0, 100),
+    points=st.lists(
+        st.builds(
+            coordinate,
+            lat=st.floats(-50, -31),
+            lon=st.floats(160, 180),
+            depth=st.floats(0, 100),
+        ),
+        min_size=1,
+        max_size=5,
     ),
 )
 @settings(deadline=None)
-def test_plane_rrup(plane: Plane, point: np.ndarray):
+def test_plane_rrup(plane: Plane, points: list[np.ndarray]):
     assume(plane.dip_dir >= plane.strike + 5)
-    point = coordinates.wgs_depth_to_nztm(point)
+    points_nztm = coordinates.wgs_depth_to_nztm(np.array(points))
 
-    def fault_coordinate_distance(fault_coordinates: np.ndarray) -> float:
+    def fault_coordinate_distance(
+        fault_coordinates: np.ndarray, point_nztm: np.ndarray
+    ) -> np.ndarray:
         fault_point = coordinates.wgs_depth_to_nztm(
             plane.fault_coordinates_to_wgs_depth_coordinates(fault_coordinates)
         )
-        return point - fault_point
+        return point_nztm - fault_point
 
-    res = sp.optimize.least_squares(
-        fault_coordinate_distance,
-        np.array([1 / 2, 1 / 2]),
-        bounds=([0] * 2, [1] * 2),
-        gtol=1e-5,
-        ftol=1e-5,
+    optimized_res = np.array(
+        [
+            np.linalg.norm(
+                sp.optimize.least_squares(
+                    fault_coordinate_distance,
+                    np.array([1 / 2, 1 / 2]),
+                    bounds=([0] * 2, [1] * 2),
+                    gtol=1e-5,
+                    ftol=1e-5,
+                    args=(point_nztm,),
+                ).fun
+            )
+            for point_nztm in points_nztm
+        ]
     )
-    optimized_res = np.linalg.norm(res.fun)
-    assert np.isclose(
-        plane.rrup_distance(coordinates.nztm_to_wgs_depth(point)),
+    np.testing.assert_allclose(
+        plane.rrup_distance(coordinates.nztm_to_wgs_depth(points_nztm)),
         optimized_res,
+        rtol=1e-5,
         atol=1e-3,
     )
 
@@ -720,16 +734,19 @@ def fault_coordinate_distance(fault_coordinates: np.ndarray) -> float:
 @given(
     plane=fault_plane,
     local_coordinates=nst.arrays(
-        float, (2,), elements={"min_value": 0, "max_value": 1}
+        float,
+        st.integers(1, 5).map(lambda n: (n, 2)),
+        elements={"min_value": 0, "max_value": 1},
     ),
 )
 def test_plane_rrup_in_plane(plane: Plane, local_coordinates: np.ndarray):
     assume(plane.dip_dir >= plane.strike + 5)
-    assert np.isclose(
+    np.testing.assert_allclose(
         plane.rrup_distance(
             plane.fault_coordinates_to_wgs_depth_coordinates(local_coordinates)
         ),
         0,
+        atol=1e-6,
     )
 
 

From 710f622a732c296cb771916203221c23eadc003f Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Fri, 7 Aug 2026 15:43:35 +1200
Subject: [PATCH 02/11] Vectorize Plane.rjb_distance

---
 pyproject.toml              |  2 +-
 source_modelling/sources.py | 22 +++++++++++++---------
 tests/test_sources.py       | 31 +++++++++++++++++++++++++------
 3 files changed, 39 insertions(+), 16 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 903b515a..60f5f926 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -20,7 +20,7 @@ dependencies = [
   "parse",
   "qcore-utils",
   "scipy",
-  "shapely",
+  "shapely>=2.0",
   "xarray[io]",
 ]
 
diff --git a/source_modelling/sources.py b/source_modelling/sources.py
index 70d67967..b5a90d41 100644
--- a/source_modelling/sources.py
+++ b/source_modelling/sources.py
@@ -850,23 +850,27 @@ def rrup_distance(self, points: np.ndarray) -> float:
             return float(rrup[0])
         return rrup
 
-    def rjb_distance(self, point: np.ndarray) -> float:
-        """Return the closest projected distance between the fault and the point.
+    def rjb_distance(self, points: np.ndarray) -> float:
+        """Return the closest projected distance between the fault and the points.
 
         Parameters
         ----------
-        point : np.ndarray
-            The point to compute distance to.
-
+        points : np.ndarray
+            The points to compute distance to.
+            Shape [N, 3] where N is the number of points
+                and each point is in (lat, lon, depth) format.
 
         Returns
         -------
         float
-            The Rjb distance (in metres) to the point.
+            The Rjb distance (in metres) to the points.
         """
-        return self.geometry.distance(
-            shapely.Point(coordinates.wgs_depth_to_nztm(point))
-        )
+        points_nztm = coordinates.wgs_depth_to_nztm(np.atleast_2d(points))
+        rjb = self.geometry.distance(shapely.points(points_nztm))
+        
+        if rjb.shape[0] == 1:
+            return float(rjb[0])
+        return rjb
 
     def rx_ry_distance(self, point: np.ndarray) -> tuple[np.ndarray, np.ndarray]:
         """Calculate the rx and ry distance between the fault and a given set of points
diff --git a/tests/test_sources.py b/tests/test_sources.py
index 7b99ef0c..ab9a1786 100644
--- a/tests/test_sources.py
+++ b/tests/test_sources.py
@@ -754,17 +754,36 @@ def test_plane_rrup_in_plane(plane: Plane, local_coordinates: np.ndarray):
     plane=fault_plane,
     distance=st.floats(1, 1000),
 )
+@settings(deadline=None)
 def test_plane_rjb(plane: Plane, distance: float):
     # if dip dir is too close to strike it will create a degenerate geometry that rjb distance isn't designed for anyway.
     assume(plane.dip_dir_nztm >= plane.strike_nztm + 1)
     assume(plane.dip != 90)
     buffer = shapely.buffer(plane.geometry, distance * 1000)
-    for point in coordinates.nztm_to_wgs_depth(np.array(buffer.exterior.coords)):
-        assert np.isclose(
-            plane.rjb_distance(point),
-            distance * 1000,
-            atol=1e-4,
-        )
+    points = coordinates.nztm_to_wgs_depth(np.array(buffer.exterior.coords))
+    np.testing.assert_allclose(
+        plane.rjb_distance(points),
+        distance * 1000,
+        atol=1e-4,
+    )
+
+
+def test_plane_rjb_single_point():
+    plane = Plane.from_centroid_strike_dip(
+        centroid=coordinate(-43.5, 172.5, 5),
+        length=10,
+        width=10,
+        strike_nztm=0,
+        dip_dir_nztm=90,
+        dip=45,
+    )
+    distance = 10_000
+    point = coordinates.nztm_to_wgs_depth(
+        np.array(shapely.buffer(plane.geometry, distance).exterior.coords[0])
+    )
+    rjb = plane.rjb_distance(point)
+    assert isinstance(rjb, float)
+    assert np.isclose(rjb, distance, atol=1e-4)
 
 
 @given(

From 5f87a5e5ce9be044133d5f6024ee084837a02385 Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Mon, 10 Aug 2026 07:52:24 +1200
Subject: [PATCH 03/11] Fixed fault.rrup_distance

---
 source_modelling/sources.py | 30 ++++++++++++++++++---------
 tests/test_sources.py       | 41 ++++++++++++++++++++++---------------
 2 files changed, 45 insertions(+), 26 deletions(-)

diff --git a/source_modelling/sources.py b/source_modelling/sources.py
index b5a90d41..9aab52b7 100644
--- a/source_modelling/sources.py
+++ b/source_modelling/sources.py
@@ -1346,7 +1346,13 @@ def rrup_distance(self, points: np.ndarray) -> float:
         float
             The rrup distances (in metres) between the points and the fault geometry.
         """
-        return np.min([plane.rrup_distance(points) for plane in self.planes])
+        rrup = np.min(
+            [np.atleast_1d(plane.rrup_distance(points)) for plane in self.planes],
+            axis=0,
+        )
+        if rrup.shape[0] == 1:
+            return float(rrup[0])
+        return rrup
 
     def fault_coordinates_to_wgs_depth_coordinates(
         self, fault_coordinates: np.ndarray
@@ -1388,23 +1394,27 @@ def fault_coordinates_to_wgs_depth_coordinates(
             np.array([segment_proportion, fault_coordinates[1]])
         )
 
-    def rjb_distance(self, point: np.ndarray) -> float:
-        """Return the closest projected distance between the fault and the point.
+    def rjb_distance(self, points: np.ndarray) -> float:
+        """Return the closest projected distance between the fault and the points.
 
         Parameters
         ----------
-        point : np.ndarray
-            The point to compute distance to.
-
+        points : np.ndarray
+            The points to compute distance to.
+            Shape [N, 3] where N is the number of points
+                and each point is in (lat, lon, depth) format.
 
         Returns
         -------
         float
-            The Rjb distance (in metres) to the point.
+            The Rjb distance (in metres) to the points.
         """
-        return shapely.distance(
-            self.geometry, shapely.Point(coordinates.wgs_depth_to_nztm(point))
-        )
+        points_nztm = coordinates.wgs_depth_to_nztm(np.atleast_2d(points))
+        rjb = self.geometry.distance(shapely.points(points_nztm))
+
+        if rjb.shape[0] == 1:
+            return float(rjb[0])
+        return rjb
 
     def rx_ry_distance(self, point: np.ndarray) -> tuple[np.ndarray, np.ndarray]:
         """Calculate the rx and ry distance between the fault and a given set of points
diff --git a/tests/test_sources.py b/tests/test_sources.py
index ab9a1786..758bad95 100644
--- a/tests/test_sources.py
+++ b/tests/test_sources.py
@@ -908,12 +908,12 @@ def test_fault_reordering(fault: Fault):
 def test_fault_rjb(fault: Fault, distance: float):
     # if dip dir is too close to strike it will create a degenerate geometry that rjb distance isn't designed for anyway.
     buffer = shapely.buffer(fault.geometry, distance * 1000)
-    for point in coordinates.nztm_to_wgs_depth(np.array(buffer.exterior.coords)):
-        assert np.isclose(
-            fault.rjb_distance(point),
-            distance * 1000,
-            atol=1e-4,
-        )
+    points = coordinates.nztm_to_wgs_depth(np.array(buffer.exterior.coords))
+    np.testing.assert_allclose(
+        fault.rjb_distance(points),
+        distance * 1000,
+        atol=1e-4,
+    )
 
 
 @given(
@@ -926,19 +926,28 @@ def test_fault_rjb(fault: Fault, distance: float):
             coordinate, lat=st.floats(-50, -31), lon=st.floats(160, 180)
         ),
     ),
-    point=st.builds(
-        coordinate,
-        lat=st.floats(-50, -31),
-        lon=st.floats(160, 180),
-        depth=st.floats(0, 100),
+    points=st.lists(
+        st.builds(
+            coordinate,
+            lat=st.floats(-50, -31),
+            lon=st.floats(160, 180),
+            depth=st.floats(0, 100),
+        ),
+        min_size=1,
+        max_size=5,
     ),
 )
-def test_fault_rrup(fault: Fault, point: np.ndarray):
-    # The fault rrup should be equal to the smallest rrup among the planes in the fault.
-    fault_rrup = fault.rrup_distance(point)
-    assert np.isclose(
-        min(plane.rrup_distance(point) for plane in fault.planes), fault_rrup, atol=1e-3
+@settings(deadline=None)
+def test_fault_rrup(fault: Fault, points: list[np.ndarray]):
+    # The fault rrup should be equal to the smallest rrup among the planes in the fault,
+    # computed independently for each point.
+    points_array = np.array(points)
+    fault_rrup = np.atleast_1d(fault.rrup_distance(points_array))
+    plane_rrup = np.min(
+        [np.atleast_1d(plane.rrup_distance(points_array)) for plane in fault.planes],
+        axis=0,
     )
+    np.testing.assert_allclose(plane_rrup, fault_rrup, atol=1e-3)
 
 
 @given(

From 017985b86967cefe0afefa03b87be5d8414bb364 Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Tue, 11 Aug 2026 08:44:09 +1200
Subject: [PATCH 04/11] Update to use shared meta-ci-action

---
 .github/workflows/ci.yml       | 14 +++++++++++
 .github/workflows/deptry.yml   | 18 --------------
 .github/workflows/numpydoc.yml | 34 -------------------------
 .github/workflows/pytest.yml   | 45 ----------------------------------
 .github/workflows/ruff.yml     |  8 ------
 .github/workflows/types.yml    | 29 ----------------------
 pyproject.toml                 |  2 +-
 uv.lock                        |  2 +-
 8 files changed, 16 insertions(+), 136 deletions(-)
 create mode 100644 .github/workflows/ci.yml
 delete mode 100644 .github/workflows/deptry.yml
 delete mode 100644 .github/workflows/numpydoc.yml
 delete mode 100644 .github/workflows/pytest.yml
 delete mode 100644 .github/workflows/ruff.yml
 delete mode 100644 .github/workflows/types.yml

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 00000000..a8c52c78
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,14 @@
+name: CI
+
+on: [pull_request]
+
+jobs:
+  ci:
+    uses: ucgmsim/meta-ci-action/.github/workflows/ci.yml@main
+    with:
+      package-dir: source_modelling
+      system-packages: "gmt libgmt-dev ghostscript gdal-bin libgdal-dev"
+      uv-extra-args: "--all-groups --all-extras"
+      numpydoc-extra-excludes: "-E ccldpy.py"
+      enable-coverage: true
+      cov-package: source_modelling
diff --git a/.github/workflows/deptry.yml b/.github/workflows/deptry.yml
deleted file mode 100644
index 06973227..00000000
--- a/.github/workflows/deptry.yml
+++ /dev/null
@@ -1,18 +0,0 @@
-name: Deptry Dependency Check
-
-on: [pull_request]
-
-jobs:
-  dependencies:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
-
-      - name: Setup uv
-        uses: astral-sh/setup-uv@v5
-
-      - name: Install GMT
-        run: sudo apt-get update && sudo apt-get install -y gmt libgmt-dev ghostscript gdal-bin libgdal-dev
-
-      - run: uv run --all-groups --all-extras deptry .
diff --git a/.github/workflows/numpydoc.yml b/.github/workflows/numpydoc.yml
deleted file mode 100644
index f61d756b..00000000
--- a/.github/workflows/numpydoc.yml
+++ /dev/null
@@ -1,34 +0,0 @@
-name: Numpydoc Lint
-
-on:
-  push:
-    branches:
-      - main
-  pull_request:
-    branches:
-      - main
-
-jobs:
-  numpydoc-lint:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-
-      - uses: awalsh128/cache-apt-pkgs-action@latest
-        with:
-          packages: fd-find
-          version: 1.0
-
-      - name: Set up Python
-        uses: actions/setup-python@v4
-
-      - name: Install dependencies
-        run: |
-          pip install numpydoc
-          sudo apt-get install
-
-      - name: Run Numpydoc Lint
-        run: |
-          fdfind . source_modelling/ -E "__init__.py" -E ccldpy.py --extension py | xargs numpydoc lint
diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
deleted file mode 100644
index 56cab787..00000000
--- a/.github/workflows/pytest.yml
+++ /dev/null
@@ -1,45 +0,0 @@
-name: Pytest Check
-
-on: [pull_request]
-
-jobs:
-  test:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-
-      - name: Install GMT
-        run: sudo apt-get update && sudo apt-get install -y gmt libgmt-dev ghostscript gdal-bin libgdal-dev
-
-      - name: Define a cache dependency glob
-        uses: astral-sh/setup-uv@v5
-        with:
-          enable-cache: true
-
-      - name: Run tests
-        run: |
-          uv run --all-extras pytest --cov=source_modelling --cov-report=html tests
-
-      - name: Combine coverage and fail it it’s under 100 %
-        run: |
-          uv run --all-extras python -m coverage html --skip-covered --skip-empty
-
-          # Report and write to summary.
-          uv run --all-extras python -m coverage report | sed 's/^/    /' >> $GITHUB_STEP_SUMMARY
-
-          # Report again and fail if under 95%.
-          uv run --all-extras python -Im coverage report --fail-under=95
-
-      - name: Upload HTML report if check failed
-        uses: actions/upload-artifact@v4
-
-        with:
-          name: html-report
-          path: htmlcov
-
-        if: ${{ failure() }}
diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml
deleted file mode 100644
index 8e10796b..00000000
--- a/.github/workflows/ruff.yml
+++ /dev/null
@@ -1,8 +0,0 @@
-name: Ruff
-on: [pull_request]
-jobs:
-  ruff:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-      - uses: chartboost/ruff-action@v1
diff --git a/.github/workflows/types.yml b/.github/workflows/types.yml
deleted file mode 100644
index 58141341..00000000
--- a/.github/workflows/types.yml
+++ /dev/null
@@ -1,29 +0,0 @@
-name: Type Check
-
-on:
-  push:
-    branches: [main]
-  pull_request:
-    branches: [main]
-
-jobs:
-  typecheck:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-
-      - name: Install GMT
-        run: sudo apt-get update && sudo apt-get install -y gmt libgmt-dev ghostscript gdal-bin libgdal-dev
-
-      - name: Setup Python
-        uses: actions/setup-python@v5
-
-      - name: Install uv
-        uses: astral-sh/setup-uv@v5
-        with:
-          enable-cache: true
-
-      - name: Run type checking with ty
-        run: uv run --all-groups --all-extras ty check --exclude source_modelling/ccldpy.py --exclude setup.py
diff --git a/pyproject.toml b/pyproject.toml
index 60f5f926..907ffd55 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -51,7 +51,7 @@ source_modelling = ['NZ_CFM/*']
 source_modelling = "source_modelling"
 
 [tool.ty.src]
-exclude = ["source_modelling/ccldpy.py"]
+exclude = ["source_modelling/ccldpy.py", "setup.py"]
 
 [tool.ruff]
 extend-exclude = ["source_modelling/ccldpy.py"]
diff --git a/uv.lock b/uv.lock
index 64d35877..5223b8a1 100644
--- a/uv.lock
+++ b/uv.lock
@@ -2085,7 +2085,7 @@ requires-dist = [
     { name = "qcore-utils" },
     { name = "scipy" },
     { name = "scipy-stubs", marker = "extra == 'types'" },
-    { name = "shapely" },
+    { name = "shapely", specifier = ">=2.0" },
     { name = "types-geopandas", marker = "extra == 'types'" },
     { name = "types-networkx", marker = "extra == 'types'" },
     { name = "types-shapely", marker = "extra == 'types'" },

From 265a4eb2f9807c1066975d2a2e2fda7d9bc5e986 Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Tue, 11 Aug 2026 11:06:26 +1200
Subject: [PATCH 05/11] ruff + typechecking

---
 source_modelling/parse_utils.py |  1 -
 source_modelling/sources.py     | 44 +++++++++++++++++++++++++--------
 uv.lock                         |  6 ++---
 wiki/Rupture-Propagation.md     |  4 ++-
 wiki/Sources.md                 | 12 +++++----
 5 files changed, 47 insertions(+), 20 deletions(-)

diff --git a/source_modelling/parse_utils.py b/source_modelling/parse_utils.py
index 7c3f5876..c81d2d2b 100644
--- a/source_modelling/parse_utils.py
+++ b/source_modelling/parse_utils.py
@@ -7,7 +7,6 @@ class ParseError(Exception):
     """Error for parsing files in source modelling."""
 
 
-
 def _is_seperator(char: str) -> bool:
     """Check if a character is a space or end of file.
 
diff --git a/source_modelling/sources.py b/source_modelling/sources.py
index 9aab52b7..691c812a 100644
--- a/source_modelling/sources.py
+++ b/source_modelling/sources.py
@@ -416,7 +416,8 @@ def dip(self) -> float:  # numpydoc ignore=RT01
     def geometry(self) -> shapely.Polygon | shapely.LineString:  # numpydoc ignore=RT01
         """shapely.Polygon or LineString: A shapely geometry for the plane (projected onto the surface).
 
-        Geometry will be a LineString if `dip = 90`."""
+        Geometry will be a LineString if `dip = 90`.
+        """
         if self.dip == 90:
             return shapely.LineString(self.bounds[:2])
         return shapely.Polygon(self.bounds)
@@ -792,7 +793,7 @@ def wgs_depth_coordinates_to_fault_coordinates(
             raise ValueError("Specified coordinates do not lie in plane")
         return np.clip(fault_local_coordinates, 0, 1)
 
-    def rrup_distance(self, points: np.ndarray) -> float:
+    def rrup_distance(self, points: np.ndarray) -> np.ndarray | float:
         """Compute RRup Distance between a fault and a point.
 
         Parameters
@@ -850,7 +851,7 @@ def rrup_distance(self, points: np.ndarray) -> float:
             return float(rrup[0])
         return rrup
 
-    def rjb_distance(self, points: np.ndarray) -> float:
+    def rjb_distance(self, points: np.ndarray) -> np.ndarray | float:
         """Return the closest projected distance between the fault and the points.
 
         Parameters
@@ -866,8 +867,10 @@ def rjb_distance(self, points: np.ndarray) -> float:
             The Rjb distance (in metres) to the points.
         """
         points_nztm = coordinates.wgs_depth_to_nztm(np.atleast_2d(points))
-        rjb = self.geometry.distance(shapely.points(points_nztm))
-        
+        rjb = np.atleast_1d(
+            shapely.distance(self.geometry, shapely.points(points_nztm))
+        )
+
         if rjb.shape[0] == 1:
             return float(rjb[0])
         return rjb
@@ -1246,15 +1249,34 @@ def centroid(self) -> np.ndarray:  # numpydoc ignore=RT01
         return self.fault_coordinates_to_wgs_depth_coordinates(np.array([1 / 2, 1 / 2]))
 
     @property
-    def geometry(self) -> shapely.Geometry:  # numpydoc ignore=RT01
+    def geometry(
+        self,
+    ) -> (
+        shapely.Polygon
+        | shapely.LineString
+        | shapely.MultiPolygon
+        | shapely.MultiLineString
+    ):  # numpydoc ignore=RT01
         """shapely.Polygon or LineString: A shapely geometry for the fault (projected onto the surface).
 
         Geometry will be LineString if `dip = 90`.
         """
-        return shapely.normalize(
+        geometry = shapely.normalize(
             shapely.union_all([plane.geometry for plane in self.planes])
         )
 
+        # Make typechecker happy, since shapely.normalize returns a BaseGeometry
+        assert isinstance(
+            geometry,
+            (
+                shapely.Polygon,
+                shapely.LineString,
+                shapely.MultiPolygon,
+                shapely.MultiLineString,
+            ),
+        )
+        return geometry
+
     @property
     def trace(self) -> np.ndarray:  # numpydoc ignore=RT01
         """np.ndarray: The trace of the fault plane on the surface."""
@@ -1331,7 +1353,7 @@ def geojson(self) -> str:  # numpydoc ignore=RT01
             )
         )
 
-    def rrup_distance(self, points: np.ndarray) -> float:
+    def rrup_distance(self, points: np.ndarray) -> np.ndarray | float:
         """Compute RRup Distance between a fault and a point.
 
         Parameters
@@ -1394,7 +1416,7 @@ def fault_coordinates_to_wgs_depth_coordinates(
             np.array([segment_proportion, fault_coordinates[1]])
         )
 
-    def rjb_distance(self, points: np.ndarray) -> float:
+    def rjb_distance(self, points: np.ndarray) -> np.ndarray | float:
         """Return the closest projected distance between the fault and the points.
 
         Parameters
@@ -1410,7 +1432,9 @@ def rjb_distance(self, points: np.ndarray) -> float:
             The Rjb distance (in metres) to the points.
         """
         points_nztm = coordinates.wgs_depth_to_nztm(np.atleast_2d(points))
-        rjb = self.geometry.distance(shapely.points(points_nztm))
+        rjb = np.atleast_1d(
+            shapely.distance(self.geometry, shapely.points(points_nztm))
+        )
 
         if rjb.shape[0] == 1:
             return float(rjb[0])
diff --git a/uv.lock b/uv.lock
index 5223b8a1..c1214fa5 100644
--- a/uv.lock
+++ b/uv.lock
@@ -2309,14 +2309,14 @@ wheels = [
 
 [[package]]
 name = "types-shapely"
-version = "2.1.0.20260630"
+version = "2.1.0.20260728"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "numpy" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/e8/10/fabba1860b907f4ec575e3c159da7adb49456a0d5d843101c6d101c9b8b7/types_shapely-2.1.0.20260630.tar.gz", hash = "sha256:727c8e42b182d9fb6df3a9376d8ac7ade56e5b13fde5bc69b9541ce66ed56eec", size = 27341, upload-time = "2026-06-30T06:00:08.012Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/be/cf/1ea740a3532b6e4cdeae8ba121618eb58a543eba2721016d358e4c0992e3/types_shapely-2.1.0.20260728.tar.gz", hash = "sha256:8ec23a5aa484c1ec7bbc56aa353cc230ae63e38e0f35a6e4b79a011d99bcfcc2", size = 27501, upload-time = "2026-07-28T04:51:41.724Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/27/43/d02f2d5a230d3c58cbe473b4efaa0af8a29d8e7fd43c39ea1c6a102e7c89/types_shapely-2.1.0.20260630-py3-none-any.whl", hash = "sha256:43cd568af2ab74c81600bc43ea0560e2f270cdd620bc59dfc1c380186951fd64", size = 38522, upload-time = "2026-06-30T06:00:06.92Z" },
+    { url = "https://files.pythonhosted.org/packages/79/8d/2e6c38118cc6b20075ccd1609840314aa8a694a255a09149b185d8a608e1/types_shapely-2.1.0.20260728-py3-none-any.whl", hash = "sha256:7299a62025528b3f0cc5af37095f05fbe7d76d399bdc8d7ea9b3d395e988f547", size = 38539, upload-time = "2026-07-28T04:51:40.638Z" },
 ]
 
 [[package]]
diff --git a/wiki/Rupture-Propagation.md b/wiki/Rupture-Propagation.md
index 1051cbca..05403e9b 100644
--- a/wiki/Rupture-Propagation.md
+++ b/wiki/Rupture-Propagation.md
@@ -108,7 +108,9 @@ total_probability_of_spanning_trees = sum(probability(tree) for tree in spanning
 # We use a smarter method that avoids computing all trees.
 for tree in spanning_trees_ordered_by_probability(G):
     sample.append(tree)
-    sample_probability += probability(tree) / total_probability_of_spanning_trees  # P(T | T is a spanning tree of G)
+    sample_probability += (
+        probability(tree) / total_probability_of_spanning_trees
+    )  # P(T | T is a spanning tree of G)
     if sample_probability >= threshold:
         break
 return sample
diff --git a/wiki/Sources.md b/wiki/Sources.md
index 94bf5113..bff9dec3 100644
--- a/wiki/Sources.md
+++ b/wiki/Sources.md
@@ -97,7 +97,7 @@ Q: How do I find the corners of a geometry?
 A: Using the `corners` property for either the `Plane` or `Fault` class.
 
 ```python
-source = Plane(...) # or Fault
+source = Plane(...)  # or Fault
 source.corners
 ```
 
@@ -127,9 +127,9 @@ xv, yv = np.meshgrid(np.linspace(0, 1, num=50), np.linspace(0, 1, num=100))
 fault_local_meshgrid = np.vstack([xv.ravel(), yv.ravel()])
 # Convert the fault local coordinates into global coordinates
 global_point_meshgrid = (
-     complicated_fault_geometry.fault_coordinates_to_wgs_depth_coordinates(
-         fault_local_meshgrid
-     )
+    complicated_fault_geometry.fault_coordinates_to_wgs_depth_coordinates(
+        fault_local_meshgrid
+    )
 )
 ```
 
@@ -141,7 +141,9 @@ A: You can use `sources.closest_point_between_sources` to find the closest point
 source_a = Plane(...)
 source_b = Fault(...)
 
-point_on_a_local, point_on_b_local = sources.closest_point_between_sources(source_a, source_b)
+point_on_a_local, point_on_b_local = sources.closest_point_between_sources(
+    source_a, source_b
+)
 distance_between_sources = coordinates.distance_between_wgs_depth_coordinates(
     source_a.fault_local_coordinates_to_wgs_depth_coordinates(point_on_a_local),
     source_b.fault_local_coordinates_to_wgs_depth_coordinates(point_on_b_local),

From 952d82119b2362254bb20f7b52dc86ae36730143 Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Tue, 11 Aug 2026 11:19:07 +1200
Subject: [PATCH 06/11] Address srf_parser type checking

---
 pyproject.toml                  |  2 +-
 source_modelling/py.typed       |  0
 source_modelling/srf.py         |  2 +-
 source_modelling/srf_parser.pyi | 87 +++++++++++++++++++++++++++++++++
 4 files changed, 89 insertions(+), 2 deletions(-)
 create mode 100644 source_modelling/py.typed
 create mode 100644 source_modelling/srf_parser.pyi

diff --git a/pyproject.toml b/pyproject.toml
index 907ffd55..9094bb48 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -45,7 +45,7 @@ dev = ["ruff", "deptry", "ty", "numpydoc"]
 
 
 [tool.setuptools.package-data]
-source_modelling = ['NZ_CFM/*']
+source_modelling = ['NZ_CFM/*', 'py.typed', 'srf_parser.pyi']
 
 [tool.setuptools.package-dir]
 source_modelling = "source_modelling"
diff --git a/source_modelling/py.typed b/source_modelling/py.typed
new file mode 100644
index 00000000..e69de29b
diff --git a/source_modelling/srf.py b/source_modelling/srf.py
index 2f7f7c87..15ac2a62 100644
--- a/source_modelling/srf.py
+++ b/source_modelling/srf.py
@@ -51,7 +51,7 @@
 import xarray as xr
 
 from qcore import coordinates
-from source_modelling import parse_utils, srf_parser  # ty: ignore[unresolved-import]
+from source_modelling import parse_utils, srf_parser
 from source_modelling.sources import Plane
 
 SW4_PLANE_DTYPE = np.dtype(
diff --git a/source_modelling/srf_parser.pyi b/source_modelling/srf_parser.pyi
new file mode 100644
index 00000000..266a95b4
--- /dev/null
+++ b/source_modelling/srf_parser.pyi
@@ -0,0 +1,87 @@
+from typing import Any
+
+import numpy as np
+import numpy.typing as npt
+
+class PySrfPlane:
+    elon: float
+    elat: float
+    nstk: int
+    ndip: int
+    len: float
+    wid: float
+    stk: float
+    dip: float
+    dtop: float
+    shyp: float
+    dhyp: float
+    def __init__(
+        self,
+        elon: float,
+        elat: float,
+        nstk: int,
+        ndip: int,
+        len: float,
+        wid: float,
+        stk: float,
+        dip: float,
+        dtop: float,
+        shyp: float,
+        dhyp: float,
+    ) -> None: ...
+
+class PyCsrMatrix:
+    row_ptr: npt.NDArray[np.uintp]
+    indices: npt.NDArray[np.uintp]
+    data: npt.NDArray[np.float32]
+    def __init__(
+        self,
+        row_ptr: npt.NDArray[np.uintp],
+        indices: npt.NDArray[np.uintp],
+        data: npt.NDArray[np.float32],
+    ) -> None: ...
+
+class PySrfMetadata:
+    lon: npt.NDArray[np.float32]
+    lat: npt.NDArray[np.float32]
+    dep: npt.NDArray[np.float32]
+    stk: npt.NDArray[np.float32]
+    dip: npt.NDArray[np.float32]
+    area: npt.NDArray[np.float32]
+    tinit: npt.NDArray[np.float32]
+    dt: npt.NDArray[np.float32]
+    rake: npt.NDArray[np.float32]
+    slip1: npt.NDArray[np.float32]
+    rise: npt.NDArray[np.float32]
+    vs: npt.NDArray[np.float32] | None
+    density: npt.NDArray[np.float32] | None
+    def __init__(
+        self,
+        lon: npt.NDArray[np.float32],
+        lat: npt.NDArray[np.float32],
+        dep: npt.NDArray[np.float32],
+        stk: npt.NDArray[np.float32],
+        dip: npt.NDArray[np.float32],
+        area: npt.NDArray[np.float32],
+        tinit: npt.NDArray[np.float32],
+        dt: npt.NDArray[np.float32],
+        rake: npt.NDArray[np.float32],
+        slip1: npt.NDArray[np.float32],
+        rise: npt.NDArray[np.float32],
+        vs: npt.NDArray[np.float32] | None = None,
+        density: npt.NDArray[np.float32] | None = None,
+    ) -> None: ...
+
+class PySrfFile:
+    planes: list[PySrfPlane]
+    metadata: PySrfMetadata
+    slipt1: PyCsrMatrix
+    def __init__(
+        self,
+        planes: list[PySrfPlane],
+        metadata: PySrfMetadata,
+        slipt1: PyCsrMatrix,
+    ) -> None: ...
+
+def parse_srf(buffer: Any) -> PySrfFile: ...
+def write_srf(py_srf_file: PySrfFile, file_path: str) -> None: ...

From 7f0a431c72c4dab81afb2ec7c8d1be00e3c32dc4 Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Tue, 11 Aug 2026 12:04:00 +1200
Subject: [PATCH 07/11] Add minimum version for qcore-utils, ruff dependabot

---
 .github/dependabot.yml | 8 ++++++++
 pyproject.toml         | 2 +-
 2 files changed, 9 insertions(+), 1 deletion(-)
 create mode 100644 .github/dependabot.yml

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 00000000..af33dea9
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,8 @@
+version: 2
+updates:
+  - package-ecosystem: "uv"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+    allow:
+      - dependency-name: "ruff"
diff --git a/pyproject.toml b/pyproject.toml
index 9094bb48..b6b395cf 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -18,7 +18,7 @@ dependencies = [
   "numpy>=2.0",
   "pandas",
   "parse",
-  "qcore-utils",
+  "qcore-utils>=2026.8.1",
   "scipy",
   "shapely>=2.0",
   "xarray[io]",

From 7508c2471b85586ee0844b8c5dbc098a795079e1 Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Tue, 11 Aug 2026 16:47:05 +1200
Subject: [PATCH 08/11] Upgrade to latest qcore version, tidy up uv.lock

---
 pyproject.toml |   2 +-
 uv.lock        | 435 +------------------------------------------------
 2 files changed, 8 insertions(+), 429 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index b6b395cf..25ef16ff 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -18,7 +18,7 @@ dependencies = [
   "numpy>=2.0",
   "pandas",
   "parse",
-  "qcore-utils>=2026.8.1",
+  "qcore-utils>=2026.8.2",
   "scipy",
   "shapely>=2.0",
   "xarray[io]",
diff --git a/uv.lock b/uv.lock
index c1214fa5..341db573 100644
--- a/uv.lock
+++ b/uv.lock
@@ -25,25 +25,6 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/7e/b3/6b4067be973ae96ba0d615946e314c5ae35f9f993eca561b356540bb0c2b/alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b", size = 13929, upload-time = "2024-07-26T18:15:02.05Z" },
 ]
 
-[[package]]
-name = "alphashape"
-version = "1.3.1"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "click" },
-    { name = "click-log" },
-    { name = "networkx" },
-    { name = "numpy" },
-    { name = "rtree" },
-    { name = "scipy" },
-    { name = "shapely" },
-    { name = "trimesh" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/2e/83/67ff905694df5b34a777123b59fdfd05998d5a31766f188aafbf5b340055/alphashape-1.3.1.tar.gz", hash = "sha256:7a27340afc5f8ed301577acec46bb0cf2bada5410045f7289142e735ef6977ec", size = 26316, upload-time = "2021-04-16T17:47:19.486Z" }
-wheels = [
-    { url = "https://files.pythonhosted.org/packages/e4/ad/77fad9d6f974ec58d837cb49fb9b483d6227a420c4f908c3578633de1d47/alphashape-1.3.1-py2.py3-none-any.whl", hash = "sha256:96a5ddd5f09534a35f03a8916aeeaac00fe4d6bec2f9ad78f87f57be3007f795", size = 13122, upload-time = "2021-04-16T17:47:17.773Z" },
-]
-
 [[package]]
 name = "annotated-doc"
 version = "0.0.4"
@@ -217,18 +198,6 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/fb/e2/79c688af8b210d232694e31e59da9f6ec747bae31c3f5946e4e9b98860d5/click-8.4.2-py3-none-any.whl", hash = "sha256:e6f9f66136c816745b9d65817da91d61d957fb16e02e4dcd0552553c5a197b76", size = 119243, upload-time = "2026-06-24T17:45:13.73Z" },
 ]
 
-[[package]]
-name = "click-log"
-version = "0.4.0"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "click" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/32/32/228be4f971e4bd556c33d52a22682bfe318ffe57a1ddb7a546f347a90260/click-log-0.4.0.tar.gz", hash = "sha256:3970f8570ac54491237bcdb3d8ab5e3eef6c057df29f8c3d1151a51a9c23b975", size = 9985, upload-time = "2022-03-13T11:10:15.262Z" }
-wheels = [
-    { url = "https://files.pythonhosted.org/packages/ae/5a/4f025bc751087833686892e17e7564828e409c43b632878afeae554870cd/click_log-0.4.0-py2.py3-none-any.whl", hash = "sha256:a43e394b528d52112af599f2fc9e4b7cf3c15f94e53581f74fa6867e68c91756", size = 4273, upload-time = "2022-03-13T11:10:17.594Z" },
-]
-
 [[package]]
 name = "click-plugins"
 version = "1.1.1.2"
@@ -262,72 +231,6 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/d1/d6/3965ed04c63042e047cb6a3e6ed1a63a35087b6a609aa3a15ed8ac56c221/colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6", size = 25335, upload-time = "2022-10-25T02:36:20.889Z" },
 ]
 
-[[package]]
-name = "contourpy"
-version = "1.3.3"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
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-
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 name = "pyproj"
 version = "3.7.2"
@@ -1723,30 +1335,25 @@ wheels = [
 
 [[package]]
 name = "qcore-utils"
-version = "2026.6.1"
+version = "2026.8.2"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
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-    { name = "descartes" },
     { name = "docstring-parser" },
-    { name = "filelock" },
-    { name = "hypothesis", extra = ["numpy"] },
-    { name = "numba" },
+    { name = "numba", marker = "python_full_version < '3.15'" },
     { name = "numpy" },
     { name = "pandas" },
     { name = "pooch" },
     { name = "pyfftw" },
     { name = "pyproj" },
-    { name = "pytest" },
     { name = "pyyaml" },
-    { name = "requests" },
-    { name = "shapely" },
+    { name = "scipy" },
     { name = "typer" },
+    { name = "typing-extensions" },
     { name = "xarray" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/70/15/38775436c27479ed4bfe4191b886abef9fd0afa382ba71ef8923e0ce5dc4/qcore_utils-2026.6.1.tar.gz", hash = "sha256:b4785829d8dd2a3f1427528f5df00465908f92cae36fcb64cdb591452bbdae8a", size = 24132178, upload-time = "2026-06-24T03:48:58.371Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/72/8d/1247786da6e689cd11846aa4027548c93c573e0409391fc2963d1cbe9800/qcore_utils-2026.8.2.tar.gz", hash = "sha256:904a680f40a42f2c27451fb86212309a801ebdb81f5a2ebef019fb3f744cb441", size = 180944, upload-time = "2026-08-11T04:38:04.432Z" }
 wheels = [
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+    { url = "https://files.pythonhosted.org/packages/a8/09/d6aa2f655c61c0a77d92340559b7fd4322ca52261a55b57fae36d7d59673/qcore_utils-2026.8.2-py3-none-any.whl", hash = "sha256:e6c82ab6024fea0090a565b601a4310cc60dec9ecb1d995f056bf316e05716f9", size = 102067, upload-time = "2026-08-11T04:38:02.785Z" },
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@@ -1815,22 +1422,6 @@ wheels = [
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 ]
 
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-    { url = "https://files.pythonhosted.org/packages/3f/50/0a9e7e7afe7339bd5e36911f0ceb15fed51945836ed803ae5afd661057fd/rtree-1.4.1-py3-none-win_arm64.whl", hash = "sha256:3d46f55729b28138e897ffef32f7ce93ac335cb67f9120125ad3742a220800f0", size = 355253, upload-time = "2025-08-13T19:32:00.296Z" },
-]
-
 [[package]]
 name = "ruff"
 version = "0.16.0"
@@ -2082,7 +1673,7 @@ requires-dist = [
     { name = "parse" },
     { name = "pytest", marker = "extra == 'test'" },
     { name = "pytest-cov", marker = "extra == 'test'" },
-    { name = "qcore-utils" },
+    { name = "qcore-utils", specifier = ">=2026.8.2" },
     { name = "scipy" },
     { name = "scipy-stubs", marker = "extra == 'types'" },
     { name = "shapely", specifier = ">=2.0" },
@@ -2228,18 +1819,6 @@ wheels = [
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 ]
 
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-name = "trimesh"
-version = "4.12.2"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "numpy" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/79/37/5cb90f04990260d2caceb6093560c6cefafca1ec522c1e43be01ca658244/trimesh-4.12.2.tar.gz", hash = "sha256:c8ca31571ac00b112e4e160e66a2d4c3491df321f056bd33806be0485d1af9d9", size = 842220, upload-time = "2026-05-01T00:57:43.333Z" }
-wheels = [
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-
 [[package]]
 name = "ty"
 version = "0.0.63"

From 390aaea626c3feffaffa27f7b3cb7f1db447d760 Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Tue, 11 Aug 2026 17:00:27 +1200
Subject: [PATCH 09/11] Add claude-review action

---
 .github/workflows/claude-review.yml | 11 +++++++++++
 1 file changed, 11 insertions(+)
 create mode 100644 .github/workflows/claude-review.yml

diff --git a/.github/workflows/claude-review.yml b/.github/workflows/claude-review.yml
new file mode 100644
index 00000000..671faa6c
--- /dev/null
+++ b/.github/workflows/claude-review.yml
@@ -0,0 +1,11 @@
+name: Claude PR Review
+
+on:
+  issue_comment:
+    types: [created]
+
+jobs:
+  review:
+    uses: ucgmsim/meta-ci-action/.github/workflows/claude-review.yml@main
+    secrets:
+      claude_code_oauth_token: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}

From 238b6d6e9349fc9832432877fab00f3c19b49c0b Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Thu, 13 Aug 2026 09:56:49 +1200
Subject: [PATCH 10/11] Simplified typing

---
 source_modelling/sources.py | 19 ++-----------------
 tests/test_gsf.py           |  8 +++-----
 2 files changed, 5 insertions(+), 22 deletions(-)

diff --git a/source_modelling/sources.py b/source_modelling/sources.py
index 691c812a..5bffe437 100644
--- a/source_modelling/sources.py
+++ b/source_modelling/sources.py
@@ -413,7 +413,7 @@ def dip(self) -> float:  # numpydoc ignore=RT01
         return np.degrees(np.arcsin(np.abs(self.bottom_m - self.top_m) / self.width_m))
 
     @property
-    def geometry(self) -> shapely.Polygon | shapely.LineString:  # numpydoc ignore=RT01
+    def geometry(self) -> shapely.Geometry:  # numpydoc ignore=RT01
         """shapely.Polygon or LineString: A shapely geometry for the plane (projected onto the surface).
 
         Geometry will be a LineString if `dip = 90`.
@@ -1251,12 +1251,7 @@ def centroid(self) -> np.ndarray:  # numpydoc ignore=RT01
     @property
     def geometry(
         self,
-    ) -> (
-        shapely.Polygon
-        | shapely.LineString
-        | shapely.MultiPolygon
-        | shapely.MultiLineString
-    ):  # numpydoc ignore=RT01
+    ) -> shapely.Geometry:  # numpydoc ignore=RT01
         """shapely.Polygon or LineString: A shapely geometry for the fault (projected onto the surface).
 
         Geometry will be LineString if `dip = 90`.
@@ -1265,16 +1260,6 @@ def geometry(
             shapely.union_all([plane.geometry for plane in self.planes])
         )
 
-        # Make typechecker happy, since shapely.normalize returns a BaseGeometry
-        assert isinstance(
-            geometry,
-            (
-                shapely.Polygon,
-                shapely.LineString,
-                shapely.MultiPolygon,
-                shapely.MultiLineString,
-            ),
-        )
         return geometry
 
     @property
diff --git a/tests/test_gsf.py b/tests/test_gsf.py
index 68d3467d..34627f51 100644
--- a/tests/test_gsf.py
+++ b/tests/test_gsf.py
@@ -47,11 +47,9 @@ def test_plane_gsf():  # Use tmp_path fixture
     assert gsf_df["dep"].min() >= 10 and gsf_df["dep"].max() <= 20
 
     for _, point in gsf_df.iterrows():
-        assert plane.geometry.contains(
-            shapely.Point(
-                coordinates.wgs_depth_to_nztm(point[["lat", "lon", "dep"]].to_numpy())
-            )
-        )
+        assert shapely.contains(plane.geometry, shapely.Point(
+            coordinates.wgs_depth_to_nztm(point[["lat", "lon", "dep"]].to_numpy())
+        ))
 
 
 def test_bad_gsf_type():

From 5ea5f6d08ad8409eb57b2873ff9238d34b74ba2f Mon Sep 17 00:00:00 2001
From: Claudio <claudio.schill@canterbury.ac.nz>
Date: Thu, 13 Aug 2026 10:12:49 +1200
Subject: [PATCH 11/11] Fix formatting

---
 tests/test_gsf.py | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/tests/test_gsf.py b/tests/test_gsf.py
index 34627f51..864baa96 100644
--- a/tests/test_gsf.py
+++ b/tests/test_gsf.py
@@ -47,9 +47,12 @@ def test_plane_gsf():  # Use tmp_path fixture
     assert gsf_df["dep"].min() >= 10 and gsf_df["dep"].max() <= 20
 
     for _, point in gsf_df.iterrows():
-        assert shapely.contains(plane.geometry, shapely.Point(
-            coordinates.wgs_depth_to_nztm(point[["lat", "lon", "dep"]].to_numpy())
-        ))
+        assert shapely.contains(
+            plane.geometry,
+            shapely.Point(
+                coordinates.wgs_depth_to_nztm(point[["lat", "lon", "dep"]].to_numpy())
+            ),
+        )
 
 
 def test_bad_gsf_type():