From 09f6137e0eb5513ebf1d784a7ee081485964ec01 Mon Sep 17 00:00:00 2001 From: Sorel Fitz-Gibbon Date: Fri, 6 Jun 2025 14:11:21 -0700 Subject: [PATCH 1/2] update to v1.22 --- CHANGELOG.md | 3 +++ Dockerfile | 2 +- README.md | 2 +- metadata.yaml | 2 +- 4 files changed, 6 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index ffd43d7..2b7db3f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm ## [Unreleased] +## [1.22] - 2024-06-06 +- Update BCFtools 1.21 to 1.22 + ## [1.21] - 2024-10-09 - Update BCFtools 1.20 to 1.21 diff --git a/Dockerfile b/Dockerfile index 205efe8..1fd9b95 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,7 +3,7 @@ ARG MINIFORGE_VERSION=24.7.1-2 FROM condaforge/mambaforge:${MINIFORGE_VERSION} AS builder # Use mamba to install tools and dependencies into /usr/local -ARG BCFTOOLS_VERSION=1.21 +ARG BCFTOOLS_VERSION=1.22 RUN mamba create -qy -p /usr/local \ -c bioconda \ -c conda-forge \ diff --git a/README.md b/README.md index 6386402..40955a2 100644 --- a/README.md +++ b/README.md @@ -13,7 +13,7 @@ GitHub repository [here](http://github.com/samtools/bcftools). # Version | Tool | Version | |------|---------| -| BCFtools | 1.21 | +| BCFtools | 1.22 | --- diff --git a/metadata.yaml b/metadata.yaml index 499b015..b29ffc1 100644 --- a/metadata.yaml +++ b/metadata.yaml @@ -5,7 +5,7 @@ Maintainers: ['mmootor@mednet.ucla.edu'] Contributors: ['Timothy Sanders', 'Mohammed Faizal Eeman Mootor', 'John Sahrmann', 'Sorel Fitz-Gibbon'] Languages: ['Dockerfile'] Tools: ['BCFtools'] -Version: ['1.21'] +Version: ['1.22'] Purpose of tool: 'BCFtools is a program for variant calling and manipulating files in the Variant Call Format (VCF) and its binary counterpart BCF.' References: 'https://samtools.github.io/bcftools/howtos/publications.html' image_name: 'bcftools' From 8d63e74682e920071d94869fdc2ddfe98a861261 Mon Sep 17 00:00:00 2001 From: Sorel Fitz-Gibbon Date: Fri, 29 Aug 2025 15:56:56 -0700 Subject: [PATCH 2/2] update release data --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 2b7db3f..767194a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,7 +9,7 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm ## [Unreleased] -## [1.22] - 2024-06-06 +## [1.22] - 2024-08-29 - Update BCFtools 1.21 to 1.22 ## [1.21] - 2024-10-09