hi, dear Dr. Xiao,
I install the dextract and showed some errors as ｆｏｌｌｏｗｓ： Ｈｏｗ ｃａｎ Ｉ ｄo?
make -f dextract_makefile
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -I/home/ubuntu/Softwares/hdf5-1.8.15-patch1/mecat_hdf5/hdf5/include -L/home/ubuntu/Softwares/hdf5-1.8.15-patch1/mecat_hdf5/hdf5/lib -o dextract dextract.c DB.c QV.c -lhdf5
/tmp/ccUmaBqB.o: In function main': dextract.c:(.text.startup+0x141): undefined reference to parse_filter'
dextract.c:(.text.startup+0x228): undefined reference to initBaxData' dextract.c:(.text.startup+0x2eb): undefined reference to sam_open'
dextract.c:(.text.startup+0x305): undefined reference to sam_header_process' dextract.c:(.text.startup+0x34e): undefined reference to sam_record_extract'
dextract.c:(.text.startup+0x361): undefined reference to SAM_EOF' dextract.c:(.text.startup+0x374): undefined reference to evaluate_bam_filter'
dextract.c:(.text.startup+0x85e): undefined reference to getBaxData' dextract.c:(.text.startup+0x875): undefined reference to nextSubread'
dextract.c:(.text.startup+0x894): undefined reference to nextSubread' dextract.c:(.text.startup+0x8b0): undefined reference to evaluate_bax_filter'
dextract.c:(.text.startup+0xe61): undefined reference to sam_close' dextract.c:(.text.startup+0x107f): undefined reference to sam_open'
dextract.c:(.text.startup+0x1352): undefined reference to parse_filter' dextract.c:(.text.startup+0x13b2): undefined reference to getBaxData'
dextract.c:(.text.startup+0x160c): undefined reference to `printBaxError'
collect2: error: ld returned 1 exit status
dextract_makefile:7: recipe for target 'dextract' failed
make: *** [dextract] Error 1
hi, dear Dr. Xiao,
I install the dextract and showed some errors as ｆｏｌｌｏｗｓ： Ｈｏｗ ｃａｎ Ｉ ｄo?
make -f dextract_makefile
gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -I/home/ubuntu/Softwares/hdf5-1.8.15-patch1/mecat_hdf5/hdf5/include -L/home/ubuntu/Softwares/hdf5-1.8.15-patch1/mecat_hdf5/hdf5/lib -o dextract dextract.c DB.c QV.c -lhdf5
/tmp/ccUmaBqB.o: In function
main': dextract.c:(.text.startup+0x141): undefined reference toparse_filter'dextract.c:(.text.startup+0x228): undefined reference to
initBaxData' dextract.c:(.text.startup+0x2eb): undefined reference tosam_open'dextract.c:(.text.startup+0x305): undefined reference to
sam_header_process' dextract.c:(.text.startup+0x34e): undefined reference tosam_record_extract'dextract.c:(.text.startup+0x361): undefined reference to
SAM_EOF' dextract.c:(.text.startup+0x374): undefined reference toevaluate_bam_filter'dextract.c:(.text.startup+0x85e): undefined reference to
getBaxData' dextract.c:(.text.startup+0x875): undefined reference tonextSubread'dextract.c:(.text.startup+0x894): undefined reference to
nextSubread' dextract.c:(.text.startup+0x8b0): undefined reference toevaluate_bax_filter'dextract.c:(.text.startup+0xe61): undefined reference to
sam_close' dextract.c:(.text.startup+0x107f): undefined reference tosam_open'dextract.c:(.text.startup+0x1352): undefined reference to
parse_filter' dextract.c:(.text.startup+0x13b2): undefined reference togetBaxData'dextract.c:(.text.startup+0x160c): undefined reference to `printBaxError'
collect2: error: ld returned 1 exit status
dextract_makefile:7: recipe for target 'dextract' failed
make: *** [dextract] Error 1