Hello,
I am attempting to run a genome assembly with MECAT. I went to check my outputs and it seem as if the mecat2pw and mecat2cns and the extraction of the 30 longest reads was achieved. Then I looked at the trimReads.fasta only to to find that the file size was 0. What went wrong?
here is the overview of the output:
-Smartmatch is experimental......
-loaded job scheduler
-start correcting raw reads (mecat2pw)
-end correction raw reads (mecat2pw)
-start correcting raw reads (mecat2cns)
-end correction raw reads (mecat2cns)
-Start correcting rawreads step 3 extract_sequences
-End correcting rawreads step 3 extract_sequences.
-End correcting raw reads
-start
-load read file cns_final.fasta
-end
-Smartmatch is experimental......
-loaded job scheduler
-skip correcting raw reads for outputs are newer
-start trimming corrected reads
-make vol for trimming
-end making vol for trimming
-start aligning volumn for trimming
-End making vol for trimming.
-Start aligning volumn for trimming.
-Parallelly start aligning volumn 1 for trimming.
-Parallelly start aligning volumn 2 for trimming.
-Parallelly start aligning volumn 3 for trimming.
-Parallelly start aligning volumn 4 for trimming.
-End aligning volumn 1 for trimming.
-End aligning volumn 2 for trimming.
-End aligning volumn 3 for trimming.
-End aligning volumn 4 for trimming.
-Start catenating pm for trimming.
-End catenating pm for trimming.
-Start trimming reads for trimming
-End trimming reads for trimming.
-End trimming corrected reads.
etc....
Hello,
I am attempting to run a genome assembly with MECAT. I went to check my outputs and it seem as if the mecat2pw and mecat2cns and the extraction of the 30 longest reads was achieved. Then I looked at the trimReads.fasta only to to find that the file size was 0. What went wrong?
here is the overview of the output:
-Smartmatch is experimental......
-loaded job scheduler
-start correcting raw reads (mecat2pw)
-end correction raw reads (mecat2pw)
-start correcting raw reads (mecat2cns)
-end correction raw reads (mecat2cns)
-Start correcting rawreads step 3 extract_sequences
-End correcting rawreads step 3 extract_sequences.
-End correcting raw reads
-start
-load read file cns_final.fasta
-end
-Smartmatch is experimental......
-loaded job scheduler
-skip correcting raw reads for outputs are newer
-start trimming corrected reads
-make vol for trimming
-end making vol for trimming
-start aligning volumn for trimming
-End making vol for trimming.
-Start aligning volumn for trimming.
-Parallelly start aligning volumn 1 for trimming.
-Parallelly start aligning volumn 2 for trimming.
-Parallelly start aligning volumn 3 for trimming.
-Parallelly start aligning volumn 4 for trimming.
-End aligning volumn 1 for trimming.
-End aligning volumn 2 for trimming.
-End aligning volumn 3 for trimming.
-End aligning volumn 4 for trimming.
-Start catenating pm for trimming.
-End catenating pm for trimming.
-Start trimming reads for trimming
-End trimming reads for trimming.
-End trimming corrected reads.
etc....