when runing the preprossing procedure 'data_generation_ST.py' on DLPFC 151507, an error accurs.
The reason is that the coordinates from 'filtered_bc_matrix.h5' have 4226 spots, and cell_types from 'metadata.csv' have 4226 spots, too. However, cell_types have 5 non-type items of 'cluster_guess'. If filtering it as the code, it will only contains 4221 items, which cause inconsistent problem between x,y, and c in the code sc_cluster = plt.scatter(x=coordinates[:,0], y=-coordinates[:,1], s=5, c=cell_types, cmap='rainbow')
Whether there is any solution of that?
when runing the preprossing procedure 'data_generation_ST.py' on DLPFC 151507, an error accurs.
The reason is that the coordinates from 'filtered_bc_matrix.h5' have 4226 spots, and cell_types from 'metadata.csv' have 4226 spots, too. However, cell_types have 5 non-type items of 'cluster_guess'. If filtering it as the code, it will only contains 4221 items, which cause inconsistent problem between x,y, and c in the code
sc_cluster = plt.scatter(x=coordinates[:,0], y=-coordinates[:,1], s=5, c=cell_types, cmap='rainbow')Whether there is any solution of that?