`badger doctor --reset` creates invalid config files, causes badger to crash

[nstelter-slac]

seen on my local linux machine.

badger doctor --reset creates a bad new config file with entries that look like:

BADGER_ARCHIVE_ROOT:
  description: This setting (BADGER_ARCHIVE_ROOT) tells Badger where to archive the
    historical optimization runs
  display_name: archive root
  is_path: true
  value:
    description: This setting (BADGER_ARCHIVE_ROOT) tells Badger where to archive
      the historical optimization runs
    display_name: archive root
    is_path: true
    value: null

the issue here is that the value section should just be a single value (directory path in this case), but instead has all of the following:

  value:
    description: This setting (BADGER_ARCHIVE_ROOT) tells Badger where to archive
      the historical optimization runs
    display_name: archive root
    is_path: true
    value: null

this causes badger to crash on launch with the following error:

Traceback (most recent call last):
  File "/home/nolan/miniforge3/envs/badger-env/bin/badger", line 7, in <module>
    sys.exit(main())
             ^^^^^^
  File "/home/nolan/repos/Badger/src/badger/__main__.py", line 139, in main
    setup_logging(args)
  File "/home/nolan/repos/Badger/src/badger/log.py", line 252, in setup_logging
    config_singleton = init_settings(args.config_filepath)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/nolan/repos/Badger/src/badger/settings.py", line 434, in init_settings
    config_singleton = ConfigSingleton(file_path, user_flag)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/nolan/repos/Badger/src/badger/settings.py", line 134, in __new__
    cls._instance._config = cls.load_or_create_config(config_path)
                            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/nolan/repos/Badger/src/badger/settings.py", line 165, in load_or_create_config
    config_data[key] = Setting(
                       ^^^^^^^^
  File "/home/nolan/miniforge3/envs/badger-env/lib/python3.12/site-packages/pydantic/main.py", line 250, in __init__
    validated_self = self.__pydantic_validator__.validate_python(data, self_instance=self)

also badger doctor should prob have a testcase, and added to docs and its usage more clear from badger -h