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GSL.script
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25 lines (18 loc) · 1.4 KB
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#5. Expansion of GSLs related genes in B. racemosa (GSL.script)
#Identification of the critical glucosinolates-related genes
makeblastdb -in GSL.gene.pep -dbtype prot -parse_seqids -out GSLdb
blastp -query acch.pep -db GSLdb -out acch_GSL.blast -evalue 1e-10 -num_threads 30 -outfmt 6
makeblastdb -in GSL.gene.pep -dbtype prot -parse_seqids -out GSLdb
blastp -query aeco.pep -db GSLdb -out aeco_GSL.blast -evalue 1e-10 -num_threads 30 -outfmt 6
makeblastdb -in GSL.gene.pep -dbtype prot -parse_seqids -out GSLdb
blastp -query baas.pep -db GSLdb -out baas_GSL.blast -evalue 1e-10 -num_threads 30 -outfmt 6
makeblastdb -in GSL.gene.pep -dbtype prot -parse_seqids -out GSLdb
blastp -query bara.pep -db GSLdb -out bara_GSL.blast -evalue 1e-10 -num_threads 30 -outfmt 6
makeblastdb -in GSL.gene.pep -dbtype prot -parse_seqids -out GSLdb
blastp -query casi.pep -db GSLdb -out casi_GSL.blast -evalue 1e-10 -num_threads 30 -outfmt 6
makeblastdb -in GSL.gene.pep -dbtype prot -parse_seqids -out GSLdb
blastp -query dilo.pep -db GSLdb -out dilo_GSL.blast -evalue 1e-10 -num_threads 30 -outfmt 6
makeblastdb -in GSL.gene.pep -dbtype prot -parse_seqids -out GSLdb
blastp -query prve.pep -db GSLdb -out prve_GSL.blast -evalue 1e-10 -num_threads 30 -outfmt 6
makeblastdb -in GSL.gene.pep -dbtype prot -parse_seqids -out GSLdb
blastp -query rhsi.pep -db GSLdb -out rhsi_GSL.blast -evalue 1e-10 -num_threads 30 -outfmt 6