Name		Name	Last commit message	Last commit date
README.md		README.md
VA.svg		VA.svg
aggAnalyze.py		aggAnalyze.py
aggExport.py		aggExport.py
aggPlot.py		aggPlot.py
aggStats.py		aggStats.py
analysisIC.py		analysisIC.py
genTimeline.py		genTimeline.py
main.py		main.py

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Automated analysis of behavioral sequences in IntelliCage

IntelliCage is a modern system for conducting automated and long-term behavioral test on behaving rodents.
A processing pipeline of Python packages was utilized to analyze behavioral data obtained in Intellicage.
This allows for identification of novel behavioral sequences that were not apparent in manual analysis.

Dependencies

The following packages are required for using the analysis scripts:

PyMICE
Pingouin
NumPy
Pandas
Matplotlib

Experimental data

IntelliCage archives for running the code are available upon reasonable request.

Reference

Esmaeili, A., Antonova, A., Sitnikova, E., & Smirnov, K. (2021). Whisker trimming during infanthood modifies the development of spike-wave discharges and behavioral sequences in IntelliCage impulsivity paradigm in adult WAG/Rij rats. Behavioural brain research, 113627. Advance online publication. https://doi.org/10.1016/j.bbr.2021.113627

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Automated analysis of behavioral sequences in IntelliCage

automation intellicage

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