CalciumInsights User Guide Website

This repository contains the static user guide website for CalciumInsights for Calcium Transient Analysis.

The website is organized as a multi-page guide:

index.html
fft-guide.html
wavelet-guide.html
style.css
script.js
README.md

Pages

index.html

Main landing page. It introduces the app, explains the numbering logic, and links to the two module-specific guides.

fft-guide.html

Dedicated guide for the FFT + Baseline Analysis module.

The numbered guide follows the same visible order used in the Shiny module:

• Input controls: 1–11
• 12. SummaryData
• 13. Peaks
• 14. Baseline Sensitivity Analysis
• 15. FFT Selection Criteria

wavelet-guide.html

Dedicated guide for the Wavelet Ridgewalking module.

The numbered guide follows the same visible order used in the Shiny module:

• Input controls: 1–7
• 8. SummaryData
• 9. Peaks
• 10. Baseline Sensitivity Analysis
• 11. Metrics
• 12. Metric Plots
• 13. Wavelet Analysis

Baseline naming rule

Both modules should use the same visible baseline names:

• Standard definition
• Low-fluorescence region baseline
• Rolling percentile baseline
• Event-specific baseline: left-right FFT minima
• Median signal (legacy)
• Mean signal (legacy)
• Min

How to update GitHub Pages

Replace the files in the root of the repository with the updated files:

index.html
fft-guide.html
wavelet-guide.html
style.css
script.js
README.md

Then commit and push to GitHub.

If the page still looks old, refresh the browser cache using Shift + Reload or open the page in an incognito/private window.