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NGS_Sample_Sheets

Sample sheet generator to run samples on NGS machines

Requirements

uses Java version 1.6.0_45

Dependencies:

Apache POI 3.15 for excel exporting

JavaMail (v1.5.1)

URL:

http://poi.apache.org

Note when updating code

  • The Jar file created is launched using a Windows batch script located in L:\Auto NGS Sample sheets. If the jar file is renamed then this script will require updating to launch the correct jar file.
  • The path to the jar file is specified in the batch script.

When updating to support a new panel

  • The pipelines.properties file in Y:\samplesheet-templates must be updated to include the properties used by the new pipeline to be included in the sample sheet.
  • A new template .xls file (in Y:\samplesheet-templates must be generated to support the new panel- see existing templates for format. Ensure indices are correct.