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EnsembleVariantCallingPipeline
EnsembleVariantCallingPipeline PublicThe EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (Mutect2, Strelka2, Varscan2, MuSE) and indel variant calling…
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HRProfiler
HRProfiler PublicHomologous Recombination Profiler (HRProfiler) is a classification tool that predicts the HRD probability for both whole-genome and exome-sequenced samples using HRD-specific mutation and copy numb…
Python 4
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- DeepHRD Public
AlexandrovLab/DeepHRD’s past year of commit activity - HRProfiler Public
Homologous Recombination Profiler (HRProfiler) is a classification tool that predicts the HRD probability for both whole-genome and exome-sequenced samples using HRD-specific mutation and copy number features.
AlexandrovLab/HRProfiler’s past year of commit activity - DupCaller Public
AlexandrovLab/DupCaller’s past year of commit activity - EnsembleVariantCallingPipeline Public
The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (Mutect2, Strelka2, Varscan2, MuSE) and indel variant calling from 3 variant callers (Mutect2, Strelka2, Varscan2).
AlexandrovLab/EnsembleVariantCallingPipeline’s past year of commit activity - DupCaller_manuscript Public
AlexandrovLab/DupCaller_manuscript’s past year of commit activity
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