Issues

• [Bug Report]: Epibenthic prey in the diet

  bug
  Atlantis-Ecosystem-Model/AtlantisTrunk#94 · Filter by author erlasturl opened on Oct 12, 2026
  1

• [Bug Report]: Fix density dependent movement

  bug
  Atlantis-Ecosystem-Model/AtlantisTrunk#93 · Filter by author erlasturl opened on Oct 6, 2026
  2

• [Bug Report]: NetCDF discard and rec-catch tracers are inflated: box-level arrays added once per layer in Harvest_Update_Total_Catch

  bug
  Atlantis-Ecosystem-Model/AtlantisTrunk#87 · Filter by author jacobkasper opened on Sep 24, 2026

• [Bug Report]: OutCatchPerFishery.txt under-reports catch by one timestep per year: Harvest_Annual_Reset zeroes undrained bm->Catch

  bug
  Atlantis-Ecosystem-Model/AtlantisTrunk#86 · Filter by author jacobkasper opened on Sep 24, 2026
  

• Build: Workflow using EOL ubuntu 18.04

  build
  Atlantis-Ecosystem-Model/AtlantisTrunk#80 · Filter by author andybeet opened on Sep 10, 2026
  

• [Bug Report]: Output from DetailedDietCheck does not match Eat

  bug
  Atlantis-Ecosystem-Model/AtlantisTrunk#74 · Filter by author cecilieha opened on Sep 1, 2026

• [Bug Report]: Error Handling for fishery escapement

  bug
  Atlantis-Ecosystem-Model/AtlantisTrunk#68 · Filter by author jcaracappa1 opened on Jun 29, 2026

• [Bug Report]: MPAs not being activated

  bug
  Atlantis-Ecosystem-Model/AtlantisTrunk#66 · Filter by author cecilieha opened on Jun 18, 2026

• remove all makefile.in form repo?

  chore
  Atlantis-Ecosystem-Model/AtlantisTrunk#63 · Filter by author andybeet opened on May 5, 2026

• chore typo in flagchangediscrd parameter

  chore
  Atlantis-Ecosystem-Model/AtlantisTrunk#58 · Filter by author jacobkasper opened on Apr 24, 2026
  

• Fix BoxBiomass file

  bug
  Bug

  Atlantis-Ecosystem-Model/AtlantisTrunk#44 · Filter by author hmorzaria opened on Apr 21, 2026
  

• Integrate R with Atlantis

  feature
  Atlantis-Ecosystem-Model/AtlantisTrunk#38 · Filter by author andybeet opened on Apr 21, 2026
  1

  

• CDFdistiller not working

  bugfeature
  Atlantis-Ecosystem-Model/AtlantisTrunk#31 · Filter by author jacobkasper opened on Apr 9, 2026
  2

• no detailed catch output

  feature
  Atlantis-Ecosystem-Model/AtlantisTrunk#30 · Filter by author jacobkasper opened on Apr 9, 2026
  2

  

• workflow to compare model outputs

  build
  Atlantis-Ecosystem-Model/AtlantisTrunk#25 · Filter by author andybeet opened on Jan 28, 2026
  1

• AtlantisDockerTest in Docker file

  refactor
  Atlantis-Ecosystem-Model/AtlantisTrunk#6 · Filter by author KevCaz opened on Mar 11, 2025
  2

• Define the process for contributions, pull requests, versioning etc

  docs
  Atlantis-Ecosystem-Model/AtlantisTrunk#2 · Filter by author andybeet opened on Dec 9, 2024
  6