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AB#8076 austrakka -> trakka #753

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c1ccdcf
AB#8076 austrakka -> trakka
samcarswell Apr 20, 2026
4727028
AB#8076 AT_CMD_SET trakka-admin -> admin
samcarswell Apr 21, 2026
8f49945
AB#8076 Merge Development
samcarswell Apr 30, 2026
ff3cfcb
AB#8076 rm austrakka ref from scripts/build
samcarswell Apr 30, 2026
5908b86
AB#8076 Linting
samcarswell Apr 30, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/bump_version.yml
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Expand Up @@ -10,7 +10,7 @@ jobs:
- uses: actions/checkout@v2
- name: Get version
run: |
echo "VERSION=$(cat austrakka/__init__.py | grep __version__ | cut -d "=" -f2 | cut -d "\"" -f2)" >> $GITHUB_ENV
echo "VERSION=$(cat trakka/__init__.py | grep __version__ | cut -d "=" -f2 | cut -d "\"" -f2)" >> $GITHUB_ENV
- name: Bump version and push tag
id: tag_version
uses: mathieudutour/github-tag-action@v5.6
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4 changes: 2 additions & 2 deletions .github/workflows/check_version.yml
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Expand Up @@ -23,8 +23,8 @@ jobs:
path: master
- name: Get versions
run: |
echo "MASTER_VERSION=$(cat master/austrakka/__init__.py | grep __version__ | cut -d "=" -f2 | cut -d "\"" -f2)" >> $GITHUB_ENV
echo "PR_VERSION=$(cat pr/austrakka/__init__.py | grep __version__ | cut -d "=" -f2 | cut -d "\"" -f2)" >> $GITHUB_ENV
echo "MASTER_VERSION=$(cat master/trakka/__init__.py | grep __version__ | cut -d "=" -f2 | cut -d "\"" -f2)" >> $GITHUB_ENV
echo "PR_VERSION=$(cat pr/trakka/__init__.py | grep __version__ | cut -d "=" -f2 | cut -d "\"" -f2)" >> $GITHUB_ENV
- name: Compare Versions
id: compare_versions
uses: samcarswell/semver-compare-action@0.1
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2 changes: 1 addition & 1 deletion .github/workflows/linting.yml
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Expand Up @@ -17,4 +17,4 @@ jobs:
pip install -r requirements.txt
- name: Analysing the code with pylint
run: |
pylint austrakka test
pylint trakka test
18 changes: 9 additions & 9 deletions CHANGELOG.md
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Expand Up @@ -50,7 +50,7 @@ and this project adheres to [Semantic Versioning].

### Changed
- `user add` now requires `--username`.
- `--queue-name` has been renamed to `--queue` for `austrakka admin message dl [show|list|delete|resend]`.
- `--queue-name` has been renamed to `--queue` for `trakka admin message dl [show|list|delete|resend]`.

## [0.81.0] - 2026-03-11

Expand Down Expand Up @@ -146,7 +146,7 @@ over 256 allowed values.
- `iam privilege list-by-user` now accepts `-gid, --global-id` rather than a positonal argument.
- `org privilege list-by-role` now accepts `-gid, --global-id` rather than a positonal argument.
- `org privilege list-by-user` now accepts `-gid, --global-id` rather than a positonal argument.
- Updated the `austrakka proforma list` command to accept the `-vt`/`--view-type` option, which determines the verbosity of the output.
- Updated the `trakka proforma list` command to accept the `-vt`/`--view-type` option, which determines the verbosity of the output.
Possible values for `-vt` are:
- `compact`: Displays minimal columns.
- `more`: Displays additional columns.
Expand Down Expand Up @@ -265,7 +265,7 @@ if the `--create` flag is set.

### Changed
- Updated the `project update` command to accept the project type parameter `-t`/`--type`.
- Updated the `austrakka project list` command to accept the `-vt`/`--view-type` option, which determines the verbosity of the output.
- Updated the `trakka project list` command to accept the `-vt`/`--view-type` option, which determines the verbosity of the output.
Possible values for `-vt` are:
- `compact`: Displays minimal columns.
- `more`: Displays additional columns.
Expand Down Expand Up @@ -294,7 +294,7 @@ is not required.
## [0.65.0]
### Changed
- Project dashboard commands now take a project abbreviation as an argument, rather than a project ID.
This update corresponds to a change in the AusTrakka API.
This update corresponds to a change in the Trakka API.
- Removed unused commands and parameters concerning dashboard widgets. The `project get-dashboard` command
now shows the currently-assigned dashboard for a project.

Expand Down Expand Up @@ -386,8 +386,8 @@ These changes involve backwards-incompatible changes to syntax. Sequence data ty
- fasta-asm - FASTA assembly, may be multi-contig
- fasta-cns - single-contig consensus FASTA sequence (previously called fasta)
- The `seq add` command has been updated to support more types of sequence data.
The syntax for uploading single-contig consensus sequences is now `austrakka seq add fasta-cns seqs.fasta`.
The syntax for uploading other types of sequence data is now `austrakka seq add <seqtype> files.csv`.
The syntax for uploading single-contig consensus sequences is now `trakka seq add fasta-cns seqs.fasta`.
The syntax for uploading other types of sequence data is now `trakka seq add <seqtype> files.csv`.
- The `seq sync get` and `seq get` commands have been updated to support more types of sequence data.
It is now possible to sync multiple types of sequence data from the same group or project to the same output directory.
Sequences will now be downloaded to a subdirectory specific to the sequence type, i.e. <seq_id>/<seqtype>/<file> .
Expand Down Expand Up @@ -518,7 +518,7 @@ In the case of fasta-cns data, the aggregated sequence file, previously named al
- `sample groups` command.

### Changed
- `user add` and `user update` to handle AusTrakka process accounts.
- `user add` and `user update` to handle Trakka process accounts.

## [0.35.1] - 2023-09-18
### Changed
Expand All @@ -528,7 +528,7 @@ In the case of fasta-cns data, the aggregated sequence file, previously named al
### Changed
- `seq add` commands will now provide a summary at the end of a bulk upload, including the number of sequences uploaded, and which sequences failed upload.
- Sequence list and download commands no longer take the deprecated --sub-query-type flag.
A CLI update to this version will be required to support download from the updated AusTrakka server.
A CLI update to this version will be required to support download from the updated Trakka server.

### Fixed
- `proforma attach` command options --file-path and --n-previous are now correctly mutually exclusive
Expand Down Expand Up @@ -649,7 +649,7 @@ A CLI update to this version will be required to support download from the updat

## [0.25.0] - 2023-03-02
### Added
- Added `proforma listgroups` command to show ProFormaEditors and AusTrakkaAdmins what group has access to a given pro forma.
- Added `proforma listgroups` command to show ProFormaEditors and TrakkaAdmins what group has access to a given pro forma.

## [0.24.1] - 2023-02-23
### Changed
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86 changes: 0 additions & 86 deletions CLAUDE.md
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4 changes: 2 additions & 2 deletions Pipfile
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Expand Up @@ -10,10 +10,10 @@ pycodestyle = "==2.14.0"
pytest = "==9.0.2"
vistir = "==0.8.0"
pytest-azurepipelines = "==1.0.5"
cx-freeze = "==8.5.3"
cx-freeze = "==8.6.4"

[packages]
austrakka = {editable = true, path = "."}
trakka = {editable = true, path = "."}
azure-identity = "==1.25.1"
click = "==8.3.1"
loguru = "==0.7.3"
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