BAH -1981 | Validate and update script to delete all patient data from Bahmni

deletePatientData/deletePatientCrater.sql

@@ -0,0 +1,22 @@
+use crater
+set foreign_key_checks=0;
+TRUNCATE table addresses;
+TRUNCATE table expenses;
+TRUNCATE table expense_categories;
+TRUNCATE table taxes;
+TRUNCATE table tax_types;
+TRUNCATE table invoice_items;
+TRUNCATE table invoices;
+TRUNCATE table recurring_invoices;
+TRUNCATE table estimate_items;
+TRUNCATE table estimates;
+TRUNCATE table items;
+TRUNCATE table notes;
+TRUNCATE table email_logs;
+TRUNCATE table exchange_rate_logs;
+TRUNCATE table exchange_rate_providers;
+TRUNCATE table payments;
+TRUNCATE table payment_methods;
+
+delete from customers where id >0; 
+set foreign_key_checks=1;

deletePatientData/deletePatientData.sh

@@ -1,96 +1,50 @@
-
-GITHUB_URL="https://raw.githubusercontent.com/Bahmni/bahmni-scripts/master/deletePatientData"
+#!/bin/sh
+# Importing variable value from .env file in docker
+. ./.env
+OMRS_DB_ContainerName=bahmni-lite-openmrsdb-1
+OPENELIS_DB_ContainerName=bahmni-standard-openelisdb-1
+ODOO_DB_ContainerName=bahmni-standard-odoodb-1
+CRATER_DB_ContainerName=bahmni-lite-craterdb-1
 
 OPENMRS_SQL_FILE="deletePatientDataForOpenMRS.sql"
 OPENELIS_SQL_FILE="deletePatientDataForOpenElis.sql"
-OPENERP_SQL_FILE="deletePatientDataForOpenERP.sql"
-CURDIR=$(pwd)
-
-
-RED='\033[0;31m'
-GREEN='\033[0;32m'
-CYAN='\033[0;36m'
-NOCOLOR='\033[0m'
-
-stop_all_bahmni_services()
-{
-
-	echo -e "${CYAN}Stopping all bahmni related services${NOCOLOR}"
-	bahmni -i $INVENTORY_FILE stop
-
-}
-
+ODOO_SQL_FILE="deletePatientDataForOdoo.sql"
+CRATER_SQL_FILE="deletePatientDataForCrater.sql"
+# When running on Docker runOnDocker=1, else another value
+runOnDocker=1
 download_and_delete_openmrs_patient_data(){
-	if [ -f $CURDIR/$OPENMRS_SQL_FILE ]; then
-		echo -e "${CYAN}deleting the existing file${NOCOLOR}"
-		rm -rf $CURDIR/$OPENMRS_SQL_FILE
-	fi
-    echo -e "${CYAN}downloading openmrs delete patient data sql file${NOCOLOR}"
-	wget $GITHUB_URL/$OPENMRS_SQL_FILE
-	if [ -z $OPENMRS_DB_USER ];then
-	    echo -e "${RED}OPENMRS_DB_USER is unset.Please set the ENVIRONMENT VARIABLE OPENMRS_DB_USER ${NOCOLOR}"
-	else
-	    echo -e "${CYAN} deleting openmrs patient data${NOCOLOR}"
-	    mysql -u$OPENMRS_DB_USER -p$PASSWORD openmrs < $OPENMRS_SQL_FILE
-	    exitcode=$?
-	    if [ $exitcode -ne 0 ]; then
-	        echo -e "${RED}Failed to delete the openmrs patient data${NOCOLOR}"
-	     else
-	        echo -e "${GREEN} Successfully deleted the openmrs patient data${NOCOLOR}"
-	     fi
-	fi
+if [ "$runOnDocker" -eq 1 ]; then
+    docker exec -i $OMRS_DB_ContainerName mysql -u$OPENMRS_DB_USERNAME -p$OPENMRS_DB_PASSWORD openmrs < $OPENMRS_SQL_FILE
+else
+    mysql -u$OPENMRS_DB_USERNAME -p$OPENMRS_DB_PASSWORD < $OPENMRS_SQL_FILE
+fi
+
 }
 
 download_and_delete_openelis_patient_data(){
-	if [ -f $CURDIR/$OPENELIS_SQL_FILE ]; then
-		echo -e "${CYAN}deleting the existing file${NOCOLOR}"
-		rm -rf $CURDIR/$OPENELIS_SQL_FILE
-	fi
-    echo -e "${CYAN}downloading openelis delete patient data sql file${NOCOLOR}"
-	wget $GITHUB_URL/$OPENELIS_SQL_FILE
-	if [ -z "$OPENELIS_DB_USER" ];
-	    then echo -e "${RED}OPENELIS_DB_USER is unset. Please set the ENVIRONMENT VARIABLE OPENELIS_DB_USER${NOCOLOR}"
-	else
-	    echo -e "${CYAN}deleting openelis patient data ${NOCOLOR}"
-	    psql -U$OPENELIS_DB_USER clinlims < $OPENELIS_SQL_FILE
-	    exitcode=$?
-	    if [ $exitcode -ne 0 ]; then
-	        echo -e "${RED}Failed to delete the openelis patient data${NOCOLOR}"
-	     else
-	        echo -e "${GREEN} Successfully deleted the openelis patient data${NOCOLOR}"
-	     fi
-	fi
-}
+if [ "$runOnDocker" -eq 1 ]
+then
+    docker exec -i $OPENELIS_DB_ContainerName psql -U postgres < $OPENELIS_SQL_FILE
+else 
+    psql -U postgres clinlims < $OPENELIS_SQL_FILE
+fi
 
-download_and_delete_openerp_patient_data(){
-	if [ -f $CURDIR/$OPENERP_SQL_FILE ]; then
-		echo -e "${CYAN}deleting the existing file${NOCOLOR}"
-		rm -rf $CURDIR/$OPENERP_SQL_FILE
-	fi
-    echo -e "${CYAN}downloading openerp delete patient data sql file${NOCOLOR}"
-	wget $GITHUB_URL/$OPENERP_SQL_FILE
-	if [ -z "$OPENERP_DB_USER" ];
-	    then echo -e "${RED}OPENERP_DB_USER is unset. Please set the ENVIRONMENT VARIABLE OPENERP_DB_USER${NOCOLOR}"
-	else
-	    echo -e "${CYAN}deleting openerp patient data${NOCOLOR}"
-	    psql -U$OPENERP_DB_USER openerp < $OPENERP_SQL_FILE
-	    exitcode=$?
-	    if [ $exitcode -ne 0 ]; then
-	        echo -e "${RED}Failed to delete the openerp patient data${NOCOLOR}"
-	     else
-	        echo -e "${GREEN} Successfully deleted the openerp patient data${NOCOLOR}"
-	     fi
-	fi
 }
 
-start_all_bahmni_services()
-{
-	echo -e "${CYAN}Starting all bahmni related services${NOCOLOR}"
-    bahmni -i $INVENTORY_FILE start
+download_and_delete_odoo_patient_data(){
+if [ "$runOnDocker" -eq 1 ]
+then
+    docker exec -i $ODOO_DB_ContainerName psql -U $ODOO_DB_USER  < $ODOO_SQL_FILE
+else
+    psql -U $ODOO_DB_USER odoo< $ODOO_SQL_FILE
+fi
 }
 
-stop_all_bahmni_services
+download_and_delete_crater_patient_data(){
+    docker exec -i $CRATER_DB_ContainerName mysql -u$CRATER_DB_USERNAME -p$CRATER_DB_PASSWORD crater < $CRATER_SQL_FILE
+}
+# When running bahmni-lite uncomment download_and_delete_crater_patient_data and Comment download_and_delete_openelis_patient_data and download_and_delete_odoo_patient_data
 download_and_delete_openmrs_patient_data
 download_and_delete_openelis_patient_data
-download_and_delete_openerp_patient_data
-start_all_bahmni_services
+download_and_delete_odoo_patient_data
+download_and_delete_crater_patient_data

deletePatientData/deletePatientDataForOdoo.sql

@@ -0,0 +1,21 @@
+Truncate table "sale_order_line",
+"sale_order",
+"account_analytic_line",
+"account_analytic_tag_sale_order_line_rel",
+"account_tax_sale_order_line_rel",
+"procurement_order",
+"sale_order_line_invoice_rel",
+"account_analytic_line_tag_rel",
+"stock_move",
+"stock_location_route_procurement",
+"stock_quant",
+"stock_quant_move_rel",
+"stock_location_route_move",
+"stock_move_operation_link",
+"stock_pack_operation_lot",
+"stock_return_picking_line",
+"stock_scrap";
+
+delete from res_partner where not exists (select ru.partner_id from res_users ru where ru.partner_id = res_partner.id) and id != 1;
+delete from markers where feed_uri like '%atomfeed/encounter/recent%' OR feed_uri like '%atomfeed/patient/recent%';
+delete from event_records where category = 'product';

deletePatientData/deletePatientDataForOpenElis.sql

@@ -1,37 +1,38 @@
-truncate table result_signature,
-	referral_result,
-	referral,
-	result_inventory,
-	result,
-	worksheet_analyte,
-	note,
-	report_external_export,
-	report_external_import,
-	analysis_qaevent,
-	analysis_storages,
-	analysis_users,
-	analysis,
-	sample_qaevent,
-	sample_requester,
-	sample_human,
-	sample_newborn,
-	sample_animal,
-	sample_environmental,
-	sample_item,
-	sample_organization,
-	sample_projects,
-	sample,
-	observation_history,
-	patient,
-	patient_identity,
-	patient_occupation,
-	person_address,
-	patient_patient_type,
-	patient_relations,
-	organization_contact;
+\c clinlims;
+SET search_path TO clinlims;
+truncate result_signature,
+referral_result,
+referral,
+result_inventory,
+result,
+worksheet_analyte,
+note,
+report_external_export,
+report_external_import,
+analysis_qaevent,
+analysis_storages,
+analysis_users,
+analysis,
+sample_qaevent,
+sample_requester,
+sample_human,
+sample_newborn,
+sample_animal,
+sample_environmental,
+sample_item,
+sample_organization,
+sample_projects,
+sample,
+observation_history,
+patient,
+patient_identity,
+patient_occupation,
+person_address,
+patient_patient_type,
+patient_relations,
+organization_contact;
 
 delete from person where not exists (select p.person_id from provider p where p.person_id = person.id);
 delete from markers where feed_uri like '%atomfeed/encounter/recent%' OR feed_uri like '%atomfeed/patient/recent%';
 delete from event_records where category = 'patient';
-
 truncate table event_records_offset_marker;

deletePatientData/deletePatientDataForOpenMRS.sql

@@ -1,10 +1,11 @@
+use openmrs;
 set foreign_key_checks=0;
 
 truncate table test_order;
 truncate table drug_order;
-truncate table note;   
-truncate table obs_relationship;  
-truncate table concept_proposal;  	
+truncate table note; 
+truncate table obs_relationship; 
+truncate table concept_proposal; 
 truncate table concept_proposal_tag_map;
 truncate table obs;
 truncate table orders;
@@ -16,13 +17,10 @@ truncate table bed_patient_assignment_map;
 truncate table encounter_provider;
 truncate table episode_encounter;
 truncate table order_group;
-truncate table encounter;  
-truncate table appointmentscheduling_appointment;
-truncate table appointmentscheduling_appointment_status_history;
+truncate table encounter; 
 truncate table visit_attribute;
 truncate table visit; 
 truncate table patient_identifier;
-truncate table appointmentscheduling_appointment_request;
 truncate table conditions;
 truncate table cohort_member;
 truncate table patient_program;
@@ -35,14 +33,15 @@ truncate table audit_log;
 delete from person_address where person_id <> 1;
 delete from person_attribute where person_id <> 1;
 delete from person_name where not exists
-	(select u.person_id from users u where person_name.person_id = u.person_id or person_name.person_id = 1)
-	and not exists (select p.person_id from provider p where person_name.person_id = p.person_id or person_name.person_id = 1);
+(select u.person_id from users u where person_name.person_id = u.person_id or person_name.person_id = 1)
+and not exists (select p.person_id from provider p where person_name.person_id = p.person_id or person_name.person_id = 1);
 delete from person where not exists
-	(select u.person_id from users u where person.person_id = u.person_id or person.person_id = 1)
-	and not exists (select p.person_id from provider p where person.person_id = p.person_id or person.person_id = 1);
-
+(select u.person_id from users u where person.person_id = u.person_id or person.person_id = 1)
+and not exists (select p.person_id from provider p where person.person_id = p.person_id or person.person_id = 1);
+delete from person_address where person_id <> 1;
+delete from person_attribute where person_id <> 1;
 delete from event_records where category = 'patient' OR category = 'Encounter';
-delete from markers where feed_uri like '%feed/patient/recent%' ;	
+delete from markers where feed_uri like '%feed/patient/recent%' ; 
 
 truncate table event_records_offset_marker;