Hula-Heliorhodopsins

This is the gene neighbors workflow, it includes two parts:

• initial screen for heliorhodopsins and DTE rhodopsins: snakemake -c[cores] -s workdlow/1-Search.snake
• actual analysis: snakemake -c[cores] -s workdlow/2-Analysis.snake

Not included in the repository are:

• directories wgs and database and the derived data stored in contigs and background
• directory Pfam - it contains the Pfam database from http://ftp.ebi.ac.uk/pub/databases/Pfam/releases/ (the released used originally is 33.1)