This is the snakemake workflow used for bioinfromatic analyses in Novel light-driven schizorhodopsins from Antarctic Minisyncoccota (Patescibacteria) and cyanobacteria. Notice that to run the pipeline from scratch, you need to prepare the following blast databases: databases/GEM/genomes.ndb, databases/GEM/otus.ndb, databases/GTDB/gtdb_genomes_reps_r226.fna.ndb, databases/ocean_microbiomics/genomes.fasta.ndb.
The analysis directory is available in the releases