GMSC Website

Website for the Global Microbial smORFs Catalogue (GMSC) — an integrated, consistently-processed catalogue of ~965 million small open reading frames (smORFs) from microbial metagenomes and high-quality isolated genomes.

Live website: gmsc.big-data-biology.org

Functionality

The website provides:

• identifier lookup for individual 100AA sequences and 90AA clusters
• sequence search through GMSC-mapper for protein or contig FASTA input
• browse and filtering by habitat, taxonomy, and quality criteria
• downloads, help, and project/about pages
• result views for sequence details, cluster members, and mapper hits

Citation

Duan, Y., Santos-Júnior, C. D., Schmidt, T. S., Fullam, A., de Almeida, B. L. S., Zhu, C., Kuhn, M., Zhao, X.-M., Bork, P. & Coelho, L. P. A catalog of small proteins from the global microbiome. Nature Communications 15, 7563 (2024). https://doi.org/10.1038/s41467-024-51894-6

Building

This is an Elm 0.19.1 single-page application.

./build.sh

This compiles src/Main.elm into dist/index.html and copies static assets (style.css, assets/, _redirects) into dist/.

Deployment

Deployed on Netlify. See netlify.toml for configuration.

License

See LICENSE.