Version 0.2.0

Added

• Full download functionality for study data (e6d9fe9)
• Sample contig depths feature (a972e4f)
• Disk caching for cluster and genome metadata (700d693)
• Comprehensive unit and integration tests for data functions (b61a145)
• Docstring and type hint for get_contig_depths() method (0603ef6)

Changed

• Improved type hints: updated return type annotations to use pl.DataFrame instead of pl.dataframe.DataFrame (072f10b)
• Added Union type hint for get_amr_annotations() to properly handle None return (072f10b)
• Use more Polars-style code patterns (35e460d)
• Use "SPIREpy" as logger name (5ec51a7)
• Only import pandas when needed to improve performance (4b9fc13)
• Improved code formatting and consistency in test files (072f10b)

Fixed

• Sample and study metadata URL handling (c73b09d)
• Unit testing calls and expected URL (d3e7ec3)
• Adapted unit tests to new function signatures (e9e9e8c)
• sample.get_mags() now correctly reads genome metadata (eaec357)
• Import error resolution (0e71aa4)
• Double calls on methods (febefaf)
• Added pyarrow as required dependency for pandas to Polars conversion (d96b148)

Removed

• Multithreading utilities (e06f92a)
• Unnecessary comments in view.py (072f10b)

Documentation

• Added comprehensive docstring for get_contig_depths() method (0603ef6)
• Added function docstrings for better code documentation (2f682f4)
• Better docstrings throughout the codebase (6e4d027)
• Major improvements to documentation (4424408)
• Fixes to Sphinx documentation generation (b8f2314)
• Improvements to ReadTheDocs configuration (afb917e)
• Formatting improvements for Sphinx docstrings (e25d7b7)
• Added reference to Sample class (77b684b)
• Added citation to README with syntax fixes (567c92e)
• Improvements to README.md (dac542a)
• Added badges to README.md (15ac08b)

Testing

• Better unit and integration tests (8d22854)