Claude Code for Biomolecular Simulation & Computational Chemistry

Beamer slides for a seminar on Claude Code, covering general concepts and the BioKT lab configuration.

Contents

• claude-biokt-slides.tex — LaTeX source
• claude-biokt-slides.pdf — compiled slides

Structure

Prelude — Live demo: /dft-homo-lumo on guanidinium

Part I: General Concepts

• What Claude Code is (and is not)
• Installation, interfaces, and operating modes
• CLAUDE.md, skills, memory, session management
• Cost, privacy, and honest caveats

Part II: The BioKT Lab Configuration

• Scientific standards and compute infrastructure
• Skills library: QM, MD, and enhanced sampling workflows
• Daily workflow in practice

Closing — Takeaways and a caution on outsourcing scientific judgment

Building

pdflatex claude-biokt-slides.tex
pdflatex claude-biokt-slides.tex  # run twice for cross-references

Requires a standard TeX Live installation with the Metropolis beamer theme and Fira Sans fonts.

License

The slides and LaTeX source are released under CC BY 4.0. You are free to share and adapt the material with attribution.

Included logos: the Claude AI logo is public domain (sourced from Wikimedia Commons) but may be protected as a trademark by Anthropic. The UPV/EHU logo is property of the University of the Basque Country and used here for identification purposes only.

Author

David De Sancho
University of the Basque Country (UPV/EHU) & DIPC