docs: warn about tabix seek cost with large which= in ScanVcfParam (#70) - #119

Draft

jmg421 wants to merge 8 commits into

Bioconductor:develfrom

jmg421:fix/70-scanvcfparam-which-perf-docs

Commits on Jun 12, 2026

fix: predictCoding on empty ranges returns AAStringSet for REFAA/VARAA (#86)
jmg421
committed
cc5c071
fix: use grepl() for stop-codon detection in predictCoding nonsense classification
jmg421
committed
1b13f0f
fix: clip large variants to transcript bounds before mapToTranscripts (#
jmg421
committed
e8210c1
fix: filter empty GRangesList elements in locateVariants cache (#87)
jmg421
committed
4604596
feat: expand() preserves non-standard rowRanges mcols (#85)
jmg421
committed
457376e
fix: writeVcf preserves fileDate and suppresses bare contig lines for all-NA seqinfo (#78)
jmg421
committed
fc8eb10

Commits on Jun 15, 2026

fix: quote-aware VCF header parser preserves '=' in Description values (#80, #89)
jmg421
committed
78b39b7

Commits on Jul 19, 2026

docs: warn about tabix seek cost with large which= in ScanVcfParam (#70)
jmg421
committed
27ac352