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md5sum mismatch when building rlseq conda environment, and after fixing build, subsequent errors in the rlseq environment

Status: Open.

#93 In Bishop-Laboratory/RLPipes;

· CicadaDennis opened on Mar 18, 2024

Location of downloaded genomes

enhancementNew feature or requestNew feature or request

Status: Open.

#84 In Bishop-Laboratory/RLPipes;

· markdunning opened on Feb 8, 2022

Implement workaround for plant genomes

enhancementNew feature or requestNew feature or request

Status: Open.

#79 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Dec 28, 2021

Need rules for spikein data

enhancementNew feature or requestNew feature or request

Status: Open.

#71 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Oct 7, 2021

Automatic alignment to rDNA and telomere regions

enhancementNew feature or requestNew feature or request

Status: Open.

#70 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Oct 7, 2021

Need cleanup for checking .failed files and notifying user

enhancementNew feature or requestNew feature or request

Status: Open.

#60 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Aug 29, 2021

Need strand assignment of bams with coverage and callpeak rules

enhancementNew feature or requestNew feature or request

Status: Open.

#59 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Aug 29, 2021

Research needed on rDNA / rep element alignment

Status: Open.

#78 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Jul 21, 2021

Need rule for FRiP analysis

enhancementNew feature or requestNew feature or request

Status: Open.

#57 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Jun 10, 2021

Needs rule for compiled report containing all samples in the run

enhancementNew feature or requestNew feature or request

Status: Open.

#56 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Jun 10, 2021

Needs blacklist beds for peak calling and coverage rules

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In Bishop-Laboratory/RLPipes;

· millerh1 opened on Jun 10, 2021

Create the gh_pages branch and initialize documentation website

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#32 In Bishop-Laboratory/RLPipes;

· millerh1 opened on May 11, 2021