Scripts used in Catherine Evans' PhD thesis.
Types of scripts in this repository:
- Analysis of wheat leaf senescence in the glasshouse: Chapter 2 + Chapter 3
- Analysis of wheat leaf senescence in the field: Chapter 2 + Chapter 4
- Allelic variation analysis pipeline: Chapter 4
- Analysis of qPCR data: Chapter 3
- Processing of KASP genotyping data: Chapter 2 + Chapter 3
- Generation of randomized complete block designs: Chapter 2 + Chapter 3
- Generation of figures for PhD thesis: all Chapters
The allelic variation analysis is carried out in bash and R. All other scripts are in R.