Newborn_TREC

Title: Thymic output in human newborns is shaped by environmental exposures and a common TCRD genetic variant

Description

This repository contains scripts and data needed to reproduce the figures in the paper Thymic output in human newborns is shaped by environmental exposures and a common TCRD genetic variant.

Repository Structure

• data/: Contains all processed tables required for reproducing the figures in the paper.
• src/: Contains scripts to reproduce the figures presented in the paper.
• figures/: Contains example figures generated by scripts in src/.

R version

R 4.2.3

Packages

dplyr 1.1.1, readr 2.1.4, ggplot2 3.4.1, ggpubr 0.6.0, rstatix 0.7.2, wesanderson 0.3.6, tibble 3.2.1, lme4 1.1.32, EnhancedVolcano 1.16.0

Contact

For any issues or questions, please contact petter.brodin@ki.se.