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ccbr-bot merged 1 commit into from
May 28, 2026
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ci: 🤖 auto-update README.md #70

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60 changes: 60 additions & 0 deletions profile/README.md
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Expand Up @@ -20,8 +20,31 @@

## 🎉 Recent Releases (last 3 months)

| Repo Name | Release Name | Release Date | Open Issues |
| :--------------------------------------------- | :-------------------------------------------------------------- | :----------- | ----------: |
| [SINCLAIR](https://github.com/CCBR/SINCLAIR) | [v0.4.0](https://github.com/CCBR/SINCLAIR/releases/tag/v0.4.0) | 2026-05-13 | 52 |
| [MOSuite](https://github.com/CCBR/MOSuite) | [v0.3.1](https://github.com/CCBR/MOSuite/releases/tag/v0.3.1) | 2026-05-07 | 32 |
| [CARLISLE](https://github.com/CCBR/CARLISLE) | [v2.7.6](https://github.com/CCBR/CARLISLE/releases/tag/v2.7.6) | 2026-05-06 | 20 |
| [actions](https://github.com/CCBR/actions) | [v0.6.2](https://github.com/CCBR/actions/releases/tag/v0.6.2) | 2026-04-23 | 13 |
| [CHAMPAGNE](https://github.com/CCBR/CHAMPAGNE) | [v0.6.0](https://github.com/CCBR/CHAMPAGNE/releases/tag/v0.6.0) | 2026-04-17 | 54 |
| [RENEE](https://github.com/CCBR/RENEE) | [v2.7.5](https://github.com/CCBR/RENEE/releases/tag/v2.7.5) | 2026-04-06 | 23 |
| [Tools](https://github.com/CCBR/Tools) | [v0.5.2](https://github.com/CCBR/Tools/releases/tag/v0.5.2) | 2026-03-24 | 9 |

## TOP contributors

| User | Total Commits | Commits in Last Month | Commits in Last 6 Months |
| :-------------------------------------------------- | ------------: | --------------------: | -----------------------: |
| [kelly-sovacool](https://github.com/kelly-sovacool) | 6145 | 121 | 880 |
| [kopardev](https://github.com/kopardev) | 2801 | 11 | 122 |
| [finneyr](https://github.com/finneyr) | 323 | 0 | 0 |
| [kvaldez](https://github.com/kvaldez) | 222 | 0 | 0 |
| [wong-nw](https://github.com/wong-nw) | 197 | 4 | 42 |
| [escauley](https://github.com/escauley) | 192 | 0 | 29 |
| [samarth8392](https://github.com/samarth8392) | 163 | 2 | 18 |
| [pajailwala](https://github.com/pajailwala) | 52 | 5 | 29 |
| [maggiecam](https://github.com/maggiecam) | 46 | 0 | 0 |
| [phoman14](https://github.com/phoman14) | 19 | 0 | 11 |

## About Us

- 👋 Hi, we’re the
Expand Down Expand Up @@ -221,6 +244,41 @@ versions bundled together.

## 📦 Full Release History

| Repo Name | Release Name | Release Date | Open Issues |
| :--------------------------------------------------------------------------- | :----------------------------------------------------------------------------- | :----------- | ----------: |
| [SINCLAIR](https://github.com/CCBR/SINCLAIR) | [v0.4.0](https://github.com/CCBR/SINCLAIR/releases/tag/v0.4.0) | 2026-05-13 | 52 |
| [MOSuite](https://github.com/CCBR/MOSuite) | [v0.3.1](https://github.com/CCBR/MOSuite/releases/tag/v0.3.1) | 2026-05-07 | 32 |
| [CARLISLE](https://github.com/CCBR/CARLISLE) | [v2.7.6](https://github.com/CCBR/CARLISLE/releases/tag/v2.7.6) | 2026-05-06 | 20 |
| [actions](https://github.com/CCBR/actions) | [v0.6.2](https://github.com/CCBR/actions/releases/tag/v0.6.2) | 2026-04-23 | 13 |
| [CHAMPAGNE](https://github.com/CCBR/CHAMPAGNE) | [v0.6.0](https://github.com/CCBR/CHAMPAGNE/releases/tag/v0.6.0) | 2026-04-17 | 54 |
| [RENEE](https://github.com/CCBR/RENEE) | [v2.7.5](https://github.com/CCBR/RENEE/releases/tag/v2.7.5) | 2026-04-06 | 23 |
| [Tools](https://github.com/CCBR/Tools) | [v0.5.2](https://github.com/CCBR/Tools/releases/tag/v0.5.2) | 2026-03-24 | 9 |
| [HowTos](https://github.com/CCBR/HowTos) | [v1.1.0](https://github.com/CCBR/HowTos/releases/tag/v1.1.0) | 2026-02-23 | 16 |
| [parkit](https://github.com/CCBR/parkit) | [v3.0.1](https://github.com/CCBR/parkit/releases/tag/v3.0.1) | 2026-02-19 | 0 |
| [LOGAN](https://github.com/CCBR/LOGAN) | [v0.3.3](https://github.com/CCBR/LOGAN/releases/tag/v0.3.3) | 2026-02-12 | 21 |
| [XAVIER](https://github.com/CCBR/XAVIER) | [v3.2.2](https://github.com/CCBR/XAVIER/releases/tag/v3.2.2) | 2026-01-29 | 10 |
| [ASPEN](https://github.com/CCBR/ASPEN) | [v1.1.2](https://github.com/CCBR/ASPEN/releases/tag/v1.1.2) | 2025-07-17 | 18 |
| [spacesavers2](https://github.com/CCBR/spacesavers2) | [v0.14.1](https://github.com/CCBR/spacesavers2/releases/tag/v0.14.1) | 2025-07-15 | 7 |
| [CCBR_tobias](https://github.com/CCBR/CCBR_tobias) | [v0.3.1](https://github.com/CCBR/CCBR_tobias/releases/tag/v0.3.1) | 2025-06-23 | 3 |
| [TRANQUIL](https://github.com/CCBR/TRANQUIL) | [v0.3.0](https://github.com/CCBR/TRANQUIL/releases/tag/v0.3.0) | 2025-06-16 | 3 |
| [CRISPIN](https://github.com/CCBR/CRISPIN) | [v1.2.1](https://github.com/CCBR/CRISPIN/releases/tag/v1.2.1) | 2025-05-28 | 21 |
| [CHARLIE](https://github.com/CCBR/CHARLIE) | [v0.12.0](https://github.com/CCBR/CHARLIE/releases/tag/v0.12.0) | 2025-05-20 | 14 |
| [Dockers2](https://github.com/CCBR/Dockers2) | [v0.1.2](https://github.com/CCBR/Dockers2/releases/tag/v0.1.2) | 2024-12-02 | 6 |
| [METRO](https://github.com/CCBR/METRO) | [v2.1](https://github.com/CCBR/METRO/releases/tag/v2.1) | 2024-03-28 | 2 |
| [CCBR-1144](https://github.com/CCBR/CCBR-1144) | [v1.0.0](https://github.com/CCBR/CCBR-1144/releases/tag/v1.0.0) | 2024-03-04 | 0 |
| [ccbr1271_ERVpipeline](https://github.com/CCBR/ccbr1271_ERVpipeline) | [v1.0.3](https://github.com/CCBR/ccbr1271_ERVpipeline/releases/tag/v1.0.3) | 2024-02-21 | 1 |
| [nf-modules](https://github.com/CCBR/nf-modules) | [v0.1.0](https://github.com/CCBR/nf-modules/releases/tag/v0.1.0) | 2023-11-29 | 16 |
| [CRISPRAnnotation](https://github.com/CCBR/CRISPRAnnotation) | [v1.0](https://github.com/CCBR/CRISPRAnnotation/releases/tag/v1.0) | 2023-10-19 | 0 |
| [SharanLab](https://github.com/CCBR/SharanLab) | [v1.0.0](https://github.com/CCBR/SharanLab/releases/tag/v1.0.0) | 2023-07-18 | 0 |
| [Pipeliner](https://github.com/CCBR/Pipeliner) | [v4.0.7](https://github.com/CCBR/Pipeliner/releases/tag/v4.0.7) | 2023-05-09 | 24 |
| [MAPLE](https://github.com/CCBR/MAPLE) | [v1.0.1](https://github.com/CCBR/MAPLE/releases/tag/v1.0.1) | 2023-02-27 | 0 |
| [DTB_ExomeSeq](https://github.com/CCBR/DTB_ExomeSeq) | [v1.0](https://github.com/CCBR/DTB_ExomeSeq/releases/tag/v1.0) | 2022-06-22 | 0 |
| [ASCENT](https://github.com/CCBR/ASCENT) | [v0.1.1](https://github.com/CCBR/ASCENT/releases/tag/v0.1.1) | 2022-01-04 | 2 |
| [CCBR_circRNA_AmpliconSeq](https://github.com/CCBR/CCBR_circRNA_AmpliconSeq) | [v0.1.1](https://github.com/CCBR/CCBR_circRNA_AmpliconSeq/releases/tag/v0.1.1) | 2021-03-24 | 0 |
| [rNA](https://github.com/CCBR/rNA) | [v1.0.0](https://github.com/CCBR/rNA/releases/tag/v1.0.0) | 2021-01-21 | 0 |
| [l2p](https://github.com/CCBR/l2p) | [v0.0.3](https://github.com/CCBR/l2p/releases/tag/v0.0.3) | 2020-07-13 | 0 |
| [MAAPster](https://github.com/CCBR/MAAPster) | [v2.0.0](https://github.com/CCBR/MAAPster/releases/tag/v2.0.0) | 2020-04-27 | 0 |

<hr>

<p align="center">
Expand All @@ -231,6 +289,8 @@ versions bundled together.

## Days since last activity

- [CCBR](activity_data/CCBR/README.md)

## Citation

Most of our end-to-end pipelines which have been used in published
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@@ -1,40 +1,41 @@
| github_handle | member/collaborator | days_inactive |
| ----------------------------------------------------------- | ------------------- | ----------------- |
| [bfugaru2025](https://github.com/bfugaru2025) | member | No Activity Found |
| [bianjh-cloud](https://github.com/bianjh-cloud) | member | 6 |
| [bianjh-cloud](https://github.com/bianjh-cloud) | member | 7 |
| [burnskd](https://github.com/burnskd) | member | No Activity Found |
| [desireetillo](https://github.com/desireetillo) | member | No Activity Found |
| [epehrsson](https://github.com/epehrsson) | member | 23 |
| [escauley](https://github.com/escauley) | member | 0 |
| [epehrsson](https://github.com/epehrsson) | member | 24 |
| [escauley](https://github.com/escauley) | member | 1 |
| [finneyr](https://github.com/finneyr) | member | No Activity Found |
| [HidetakaOhnuki-NCI](https://github.com/HidetakaOhnuki-NCI) | member | No Activity Found |
| [huaitian1129](https://github.com/huaitian1129) | member | No Activity Found |
| [JWrows2014](https://github.com/JWrows2014) | member | No Activity Found |
| [kcgfarb](https://github.com/kcgfarb) | member | 0 |
| [kelly-sovacool](https://github.com/kelly-sovacool) | member | 5 |
| [kcgfarb](https://github.com/kcgfarb) | member | No Activity Found |
| [kelly-sovacool](https://github.com/kelly-sovacool) | member | 0 |
| [kopardev](https://github.com/kopardev) | member | 0 |
| [kvaldez](https://github.com/kvaldez) | member | No Activity Found |
| [lobanovav](https://github.com/lobanovav) | member | No Activity Found |
| [maggiecam](https://github.com/maggiecam) | member | No Activity Found |
| [McIntoshC](https://github.com/McIntoshC) | member | No Activity Found |
| [onealka](https://github.com/onealka) | member | No Activity Found |
| [pajailwala](https://github.com/pajailwala) | member | 5 |
| [pajailwala](https://github.com/pajailwala) | member | 6 |
| [phoman14](https://github.com/phoman14) | member | No Activity Found |
| [raraslw-nih](https://github.com/raraslw-nih) | member | No Activity Found |
| [RobSchultz4](https://github.com/RobSchultz4) | member | No Activity Found |
| [samarth8392](https://github.com/samarth8392) | member | 6 |
| [samarth8392](https://github.com/samarth8392) | member | 20 |
| [shaoli86](https://github.com/shaoli86) | member | No Activity Found |
| [TJoshMeyer](https://github.com/TJoshMeyer) | member | No Activity Found |
| [VidhurDS](https://github.com/VidhurDS) | member | No Activity Found |
| [vinegang](https://github.com/vinegang) | member | No Activity Found |
| [wilfriedguiblet](https://github.com/wilfriedguiblet) | member | No Activity Found |
| [wong-nw](https://github.com/wong-nw) | member | 0 |
| [wong-nw](https://github.com/wong-nw) | member | 1 |
| [wuy24](https://github.com/wuy24) | member | No Activity Found |
| [yongmzhao](https://github.com/yongmzhao) | member | No Activity Found |
| [abombin](https://github.com/abombin) | collaborator | No Activity Found |
| [AlecSilver](https://github.com/AlecSilver) | collaborator | 18 |
| [AlecSilver](https://github.com/AlecSilver) | collaborator | 19 |
| [dnousome](https://github.com/dnousome) | collaborator | No Activity Found |
| [e-hutchins](https://github.com/e-hutchins) | collaborator | No Activity Found |
| [fangliu117](https://github.com/fangliu117) | collaborator | 27 |
| [fangliu117](https://github.com/fangliu117) | collaborator | 28 |
| [nanobio-jcjones](https://github.com/nanobio-jcjones) | collaborator | No Activity Found |
| [skchronicles](https://github.com/skchronicles) | collaborator | No Activity Found |
| [slsevilla](https://github.com/slsevilla) | collaborator | No Activity Found |
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