Optimize clustering, add Whisper, CI workflow#126
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jeremymanning merged 7 commits intomasterfrom Dec 10, 2025
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…s.txt - Add openai-whisper to requirements.txt for speech decoding - Refactor setup.py to read install_requires from requirements.txt - Update clustering.py to return NaN (not 0.5) when insufficient data - Remove debug print statements from clustering.py - Remove benchmark_cluster.py (temporary file) - Add CLAUDE.md to .gitignore 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Run tests on Python 3.9, 3.10, 3.11, 3.12 - Include coverage reporting - Add flake8 linting for syntax errors - Trigger on push to master/main/optimize-quail and PRs 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add .readthedocs.yaml for RTD v2 config - Update docs/doc_requirements.txt with modern package versions - Configure Python 3.11 build environment 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Remove unused compute_stimulus_stick function with undefined variables - Fix typo: experimeter_filter -> experimenter_filter 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add GitHub Actions test status badge - Add ReadTheDocs documentation badge - Update speech decoding mention from Google Cloud to OpenAI Whisper 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Install ffmpeg via apt-get for audio processing - Install CPU-only torch for Whisper model inference - Install openai-whisper explicitly before package 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The wordpool groups are numbered 1-16, not 0-15. Using range(16) would select group 0 which doesn't exist, causing sample() to fail. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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Summary
Changes
Performance Optimizations
Speech Decoding
CI/CD
tests.yml)Other
Test plan
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