Configure Renovate

[dnastack-renovate]

Welcome to Renovate! This is an onboarding PR to help you understand and configure settings before regular Pull Requests begin.

🚦 To activate Renovate, merge this Pull Request. To disable Renovate, simply close this Pull Request unmerged.

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Detected Package Files

• docker/fastp/Dockerfile (dockerfile)
• docker/pydeseq2/Dockerfile (dockerfile)
• docker/salmon/Dockerfile (dockerfile)
• docker/star_samtools/Dockerfile (dockerfile)
• .github/workflows/lint-test-workflows.yml (github-actions)
• .github/workflows/sync-fork.yml (github-actions)
• docker/pydeseq2/requirements.txt (pip_requirements)

What to Expect

With your current configuration, Renovate will create 10 Pull Requests:

Update dependency anndata to v0.12.14

• Schedule: ["at any time"]
• Branch name: renovate/anndata-0.x
• Merge into: main
• Upgrade anndata to ==0.12.14

Update dependency matplotlib to v3.10.9

• Schedule: ["at any time"]
• Branch name: renovate/matplotlib-3.x
• Merge into: main
• Upgrade matplotlib to ==3.10.9

Update dependency pandas to v2.3.3

• Schedule: ["at any time"]
• Branch name: renovate/pandas-2.x
• Merge into: main
• Upgrade pandas to ==2.3.3

Update dependency pydeseq2 to v0.5.4

• Schedule: ["at any time"]
• Branch name: renovate/pydeseq2-0.x
• Merge into: main
• Upgrade pydeseq2 to ==0.5.4

Update dependency numpy to v2.4.5

• Schedule: ["at any time"]
• Branch name: renovate/numpy-2.x
• Merge into: main
• Upgrade numpy to ==2.4.5

Update dependency pytximport to v0.13.0

• Schedule: ["at any time"]
• Branch name: renovate/pytximport-0.x
• Merge into: main
• Upgrade pytximport to ==0.13.0

Update dependency scikit-learn to v1.8.0

• Schedule: ["at any time"]
• Branch name: renovate/scikit-learn-1.x
• Merge into: main
• Upgrade scikit-learn to ==1.8.0

Update dependency scipy to v1.17.1

• Schedule: ["at any time"]
• Branch name: renovate/scipy-1.x
• Merge into: main
• Upgrade scipy to ==1.17.1

Update actions/checkout action to v6

• Schedule: ["at any time"]
• Branch name: renovate/actions-checkout-6.x
• Merge into: main
• Upgrade actions/checkout to v6

Update dependency pandas to v3

• Schedule: ["at any time"]
• Branch name: renovate/pandas-3.x
• Merge into: main
• Upgrade pandas to ==3.0.3

🚸 Branch creation will be limited to maximum 2 per hour, so it doesn't swamp any CI resources or overwhelm the project. See docs for prhourlylimit for details.

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Warning

Please correct - or verify that you can safely ignore - these dependency lookup failures before you merge this PR.

• Failed to look up docker package us-central1-docker.pkg.dev/dnastack-asap-parkinsons/workflow-images/util

Files affected: docker/fastp/Dockerfile, docker/pydeseq2/Dockerfile, docker/salmon/Dockerfile, docker/star_samtools/Dockerfile

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❓ Got questions? Check out Renovate's Docs, particularly the Getting Started section.
If you need any further assistance then you can also request help here.

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This PR has been generated by Renovate Bot.