[CU-86b4umhm1] Update dependency miniwdl to v1.14.2

[dnastack-renovate]

This PR contains the following updates:

Package	Change	Age	Adoption	Passing	Confidence
miniwdl	==1.12.1 → ==1.14.2

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Release Notes

chanzuckerberg/miniwdl (miniwdl)

v1.14.2

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Getting Started

• Fix standard library bugs & compliance issues:
  • Float ops using integer division (#​840 @​aofarrel @​lilymaryam)
  • collect_by_key() silently merging distinct Float keys with the same string representation
  • basename(path, "") returning empty string instead of filename
  • \r\n line end trimming in read_{lines,tsv,map}
  • Type inference issues in read_tsv(), zip(), and cross()
• Guard against out-of-range uid/gid in Docker Swarm backend (#​839 @​nh13)
• Dependency updates

NOTE: Skipped v1.14.{0,1} due to release process snafu's.

v1.14.1

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v1.14.0

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v1.13.1

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This regular maintenance release addresses minor bugs and dependency issues.

• CLI: replace bullet with questionary (#​777 @​bshifaw)
• make JSON pair definitions case-insensitive (#​789 @​stxue1)
• fix asyncio.get_event_loop() error in newer Python versions (#​791 #​793 @​wleepang)
• migrate pkg_resources usage to importlib_metadata (#​794 #​802 @​hexylena)
• fix miniwdl configure --cfg FILENAME_IN_CWD.cfg (#​805 @​hexylena)
• ensure static type error for unknown fields in struct literals (#​808 @​gshiba)

Internal refactoring and implementation for WDL 1.2 continues in the background!

v1.13.0

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v1.13.0 addresses several WDL 1.1 spec interoperability issues, with thanks to the reporting community members.

⚠️ These changes, while improving WDL spec compliance, bear slightly elevated risks of backwards-incompatibility with prior miniwdl versions. Please report any issues or unexpected behaviors for investigation.

Interoperability

• dedent task commands before eval/interpolation (#​674 @​adamnovak)
• allow float values for task runtime.cpu (#​690 @​adamnovak)
• round() "half up" instead of "to even" (#​698 @​stxue1)
• fix Array runtime typing issues (#​699 #​700 @​stxue1)
• allow trailing commas in meta arrays (#​708 @​adthrasher)
• fix ValueError reading empty JSON into Map (#​726 @​ahvigil)
• refactor typechecking for equatability & comparability (#​736)
• allow non-typesafe read_json(...) within arrays and if-then-else branches (#​740 @​ahvigil)

Runner

• allow namespace prefix in task-only input JSON files (#​693 @​stxue1)
• fix cache of task with empty outputs (#​715 @​adamnovak)
• fix recognition of exponential notation in JSON/YAML run input files (#​717 @​sach244n)
• --no-quant-check applies to comparison operators (#​752 @​stxue1)

Python WDL API

• Multi-line strings (development/1.2 feature) get first-class AST representation as WDL.Expr.MultiLineString, which is dedented upon evaluation (instead of during parsing into WDL.Expr.String).
• WDL.Type.* classes expose ty1.equatable(ty2) and ty1.comparable(ty2) operators, indicating whether it is valid to use the WDL == != or < <= > >= operators, respectively.

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