An example showing how to set up and run analyses with DeepDiveR in R, see carnivoran_analysis. Instructions for installing DeepDiveR and package documentation can be found here.
We also provide two worked examples showing how to setup and run a DeepDive analysis in Python (marine_analysis and proboscidean_analysis ). A step-by-step explanation is provided here.
Instructions on how to install DeepDive are available here.